Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19740 1209 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 1191 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G02480 472 / 1e-147 AAA-type ATPase family protein (.1) AT1G02890 414 / 2e-126 AAA-type ATPase family protein (.1.2) AT4G24860 365 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 338 / 1e-101 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G52882 328 / 3e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 326 / 3e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 324 / 5e-95 AAA-type ATPase family protein (.1) AT4G27680 241 / 6e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G069800 [exp] 1636 / 0 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G096300 [exp] 471 / 2e-147 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.015G094100 [exp] 466 / 2e-145 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.002G205900 [exp] 458 / 7e-143 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.014G131000 [exp] 452 / 2e-140 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.001G097600 [exp] 344 / 5e-104 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 337 / 2e-101 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G026900 [exp] 327 / 6e-98 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G035400 [exp] 325 / 6e-97 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010204 [exp] 1194 / 0 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 1174 / 0 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 1097 / 0 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10040976 [exp] 507 / 1e-167 AT3G19740 472 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010282 [exp] 379 / 3e-113 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 377 / 2e-112 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10028752 [exp] 334 / 2e-100 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10024692 [exp] 332 / 2e-99 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10027551 [exp] 330 / 1e-98 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017535 [exp] 330 / 1e-98 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Potri.005G093300.1 pacid=42805512 polypeptide=Potri.005G093300.1.p locus=Potri.005G093300 ID=Potri.005G093300.1.v4.1 annot-version=v4.1 ATGTATGCAGGAATAATTAAGTGTAGAAATCCGAGATGGGGTTCTTTCTTTCATCCATCAAAGCATTTCATTAGGCCAAACTGCCAGGACCGGTCTATGA GCTGTTCAATAGTAGCGAGGGGCCCTTTTTTGCATGCTGGTTTCATTAAAAGAAAGCTATTATATTCACTTTCATCAAGGAGCATTGCCTTCAGAAATAG TGATGGTGGTTTGCTTAGAAGGTCTAATACGTGTTGGACGGATATTCAATTCCGTGCATGTAGTTCAGGATCGGATGGGAGGAATACGAGTGAGGATAAA CATGCCCCGGTGAAAGATGGAGCTAGCTCTGATAATGAGAAAACCCGGCAAGAAACAGTTAGTGAAGATGCAAAGCACTGTGATGCACATGCTCGACTAG GGGAACAAGATCAAAAGGAGTGGCTTCATAATGAGAAGCTTGCTATAGAAGCTAAAAAGAAGGAATCTCCATCTTTGACTAGAAGAGAAAAGTTTAAAAA TGAATTCTTGAGGAGAATTGTTCCATGGGAGAAGCTGCATGTTTCCTGGGATAATTTTCCGTACTACATCAATGAGCACACCAAAAATACTCTGGTGGAA TGCGTTGCTTCCCATTTGAAACATAAAAAATGCACCACTTCCTATGGGGCTCGTCTGACATCTTCGAGTGGGAGAATTCTGCTCCAGAGTGTTCCAGGAA CCGAGCTTTATCGGGAAAGAACTGTTAAAGCACTGGCACAGGATTTACAGGTTCCCCTGCTGGTGCTTGATAGCGGCGTTCTTGCGCATTATGATTTTGG AGATGATGAGTGTGTATCAGATGATAGTGCAGAAGCTGTGGAGGATGGTATTTCAGAGTCAGAAGTTGAGGATGAAAATGACGCAGTCAATGAAGAGGAG TGGACAAGCAGTGTTGAGGCTAAATCAGATTTTAGTGATGATGATGCAGTTGATGTAGAGGCAACTGCTGAGGCAGCCCTGAAGAAGCTTCTTCCCTTCA GCCTACAAGAATTTGAGAAGAGAGTCTCTGGAGAATGTGACAGTTCCTCTGAGCCCTCAAAGAATGAGGCTGAAGACACTTCTGAGACCCTCAAAAAGCC ACTTAATAAAGGGGATCGGGTGAAGTATGTGGGGCCATCCATACGCATTGAGGCTGATGATAGGCCTTTATCAAGTGGTCAACGTGGGGAAGTATATGAG ATGAATGGAGATCAAGTCGCTGTTATTTTGGATATTGGTAATGATAACAAATCAAATGAAGGAGAGAAGGATGAGAAACTCCAAGAGCAGCCTGCAAAAG CACCAGTTTGTTGGATAGATGCTAAGGATATTGAGCATGATCCTGACACCGAGACAGAAGACTGCTATATTGCGATGGAGGTTCTGTGTGAGGTTTTGTG TTCCATGCAACCCATTATTGTCTATTTTGCAGATTCTTCACAGTGGTTGTCTAGGGCGGTTCCCAAGTCAAACCACAAGGATTTTGTAAGCAAGGTACAG GAAATGTTTGACCAATTACCAGGACCTGTTGTTTTGATTTGTGGACAGAACAAAGCTGAAACAGGGTCAAAGGAGAAAGAAAGATTTACAATGGTTCTTC CAAATTTGGGTCATCTGGCAAAGCTGCCTCTCTCCTTGACGCATCTCACTGAGGGACTCAAAGGGGCAAAGAGATCCAATGAAAATGACATATACAAGCT CTTCACCAATATTTTGTGCCTCAATCCCCCAAAGGAGGAAGATCTTCTTAGAACATTCAATAAACAGGTTGAAGAGGACAGGAAAATTGTTATATCGAGG AGTAATTTAAATGAACTGCACAAGGTTCTCGAAGAAAATGAGATGTCATGCATGGACCTATTGCACGTAAACACTGATGGTCTGATTCTAACAAAGCGGA AGGCTGAAAAGGTTATTGGCTGGGCGAAGAATCATTACTTATCATCTTGCCCGCTCCCATGCATAAAGGGGGACCGATTGTCTTTGCCTCGTAAAAGCCT TGAGATAGCAATCGTGAGGTTGAAGGAGCAAGAAACCATATCTGAAAAGCCATCACAGAATCTGAAGAACGTGGCCATGGATGAGTATGAAAGCAACTTT GTTTCAGCTGTGGTAGCTCCGGGTGAAATTGGTGTCAAATTCAATGATGTAGGTGCTCTTGAAGATGTGAAGAAGGCTTTGAATGAACTCGTCATTCTTC CTATGAGGAGACCAGAACTTTTCTCTCGTGGAAATTTGTTGCGGCCTTGCAAAGGAATTTTGCTCTTTGGACCTCCTGGAACTGGGAAAACCCTTCTTGC CAAAGCACTTGCTACAGAGGCAGAGGCAAACTTTATCAGTATTACTGGTTCAACTCTTACTTCAAAGTGGTTCGGAGATGCTGAAAAGCTCACCAAGGCT CTCTTCTCCTTTGCTAGCAAGCTGGCTCCTGTCATTATATTTGTTGATGAGGTTGACAGTTTGCTTGGTGCTCGTGGTGGTTCTTTCGAGCATGAAGCTA CTAGAAGAATGAGAAATGAGTTCATGGCAGCGTGGGATGGAATGAGATCAAAAGATAGCCAGAGAATCCTTATCCTTGGTGCCACAAATCGACCATTTGA TCTTGACGATGCTGTAATCCGCCGGTTACCTAGAAGAATACTTGTGGACCTACCAGATGCTGAAAATCGTATGAAGATTCTCAGAATAATTCTGAGTCGA GAAAATTTAGAACCTGATTTCCAGTTTGACAAACTTGCAAATGCAACCGAGGGATACTCTGGAAGTGATTTGAAGAACCTATGTATTGCTGCAGCATATA GACCAGTCGAAGAACTTTTAGAAGAAGAAAAGGGCGGCAAGAATGGTGCAGCTCCTGCATTAAGAACACTTAATTTGAATGATTTCATTCAGTCAAAAGC AAAGGTGGGGCCTTCAGTTTCCTTCGATGCAGCTAGTATGAACGAGCTGAGGAAATGGAACGAGCAATATGGAGAAGGTGGAAGCAGAAAACAATCACCT TTTGGTTTCTGA
AA sequence Show only first row Show all	>Potri.005G093300.1 pacid=42805512 polypeptide=Potri.005G093300.1.p locus=Potri.005G093300 ID=Potri.005G093300.1.v4.1 annot-version=v4.1 MYAGIIKCRNPRWGSFFHPSKHFIRPNCQDRSMSCSIVARGPFLHAGFIKRKLLYSLSSRSIAFRNSDGGLLRRSNTCWTDIQFRACSSGSDGRNTSEDK HAPVKDGASSDNEKTRQETVSEDAKHCDAHARLGEQDQKEWLHNEKLAIEAKKKESPSLTRREKFKNEFLRRIVPWEKLHVSWDNFPYYINEHTKNTLVE CVASHLKHKKCTTSYGARLTSSSGRILLQSVPGTELYRERTVKALAQDLQVPLLVLDSGVLAHYDFGDDECVSDDSAEAVEDGISESEVEDENDAVNEEE WTSSVEAKSDFSDDDAVDVEATAEAALKKLLPFSLQEFEKRVSGECDSSSEPSKNEAEDTSETLKKPLNKGDRVKYVGPSIRIEADDRPLSSGQRGEVYE MNGDQVAVILDIGNDNKSNEGEKDEKLQEQPAKAPVCWIDAKDIEHDPDTETEDCYIAMEVLCEVLCSMQPIIVYFADSSQWLSRAVPKSNHKDFVSKVQ EMFDQLPGPVVLICGQNKAETGSKEKERFTMVLPNLGHLAKLPLSLTHLTEGLKGAKRSNENDIYKLFTNILCLNPPKEEDLLRTFNKQVEEDRKIVISR SNLNELHKVLEENEMSCMDLLHVNTDGLILTKRKAEKVIGWAKNHYLSSCPLPCIKGDRLSLPRKSLEIAIVRLKEQETISEKPSQNLKNVAMDEYESNF VSAVVAPGEIGVKFNDVGALEDVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAEANFISITGSTLTSKWFGDAEKLTKA LFSFASKLAPVIIFVDEVDSLLGARGGSFEHEATRRMRNEFMAAWDGMRSKDSQRILILGATNRPFDLDDAVIRRLPRRILVDLPDAENRMKILRIILSR ENLEPDFQFDKLANATEGYSGSDLKNLCIAAAYRPVEELLEEEKGGKNGAAPALRTLNLNDFIQSKAKVGPSVSFDAASMNELRKWNEQYGEGGSRKQSP FGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19740			P-loop containing nucleoside t...		Potri.005G093300 [exp]	0	1
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.001G171300 [exp]	1.73	0.9062
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	4.47	0.8834
					Potri.013G087300 [exp]	5.19	0.8668
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	5.47	0.8685	LUG.1
AT5G55600			agenet domain-containing prote...		Potri.016G007500 [exp]	5.74	0.8619
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123800 [exp]	6.24	0.8365	KUP10.3
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.011G078300 [exp]	6.63	0.8772
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G149800 [exp]	7.54	0.8493
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	9.16	0.8610
AT1G06510			unknown protein		Potri.005G203100 [exp]	9.64	0.8822

Compare expression of checked genes

Potri.005G093300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.