Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 251 / 4e-77 GRAS RGL1 RGA-like 1 (.1) AT3G03450 249 / 6e-76 GRAS RGL2 RGA-like 2 (.1) AT1G14920 237 / 3e-71 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 236 / 3e-71 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 232 / 7e-69 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G41920 215 / 2e-64 GRAS GRAS family transcription factor (.1) AT2G04890 208 / 1e-61 GRAS SCL21 SCARECROW-like 21 (.1) AT3G54220 211 / 1e-60 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G48150 202 / 9e-59 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G21450 202 / 1e-57 GRAS SCL1 SCARECROW-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G093900 [exp] 323 / 2e-104 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.015G091200 [exp] 323 / 3e-104 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.001G326000 [exp] 284 / 1e-87 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 264 / 5e-81 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 253 / 2e-76 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 249 / 3e-75 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.012G020200 [exp] 244 / 3e-75 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.008G131700 [exp] 247 / 2e-74 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.015G008300 [exp] 234 / 3e-71 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031748 [exp] 569 / 0 AT3G03450 248 / 2e-74 RGA-like 2 (.1) Lus10031172 [exp] 568 / 0 AT3G03450 257 / 5e-78 RGA-like 2 (.1) Lus10037055 [exp] 325 / 4e-105 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10036932 [exp] 322 / 6e-104 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10017930 [exp] 306 / 9e-98 AT1G66350 241 / 2e-73 RGA-like 1 (.1) Lus10041540 [exp] 295 / 1e-91 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 293 / 5e-90 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10033583 [exp] 236 / 2e-70 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 235 / 5e-70 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10022418 [exp] 230 / 1e-69 AT1G50420 592 / 0.0 scarecrow-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.005G095100.1 pacid=42803571 polypeptide=Potri.005G095100.1.p locus=Potri.005G095100 ID=Potri.005G095100.1.v4.1 annot-version=v4.1 ATGGAAGGCATGAATGACTGGCTCTCCTTCTCCATGCACGAGAGTCTCAACCATGACCTTGCCATTAGAAGGTTTTGTCCTGCTAGAATGGAGCTGGAAC AAGGAGAAGAGTGCTGGGAGGAAATCACATTCAGTGAGATTGAACTTCTTTCTCCTGATGATGACAGCACTAGCCCTCCTCACTTAGCTGATTCTGAGGT GGATGAATTGGTTGATAGCTTTATTAACGTGGATCAAGACGGTAACAAGGATGACAAGTCCTTTGAGAAGGACCAGGATTTCAATCACCTCCAAGATGAT CATATAGAGGCATTTTCCATGGTGAATGATGTTTTTCAAGACGTTCCAAAGATGAATATAGAAGGTGATGAATTGGAGATGAGCAGCTCTTTCGAAGATC TTGAAGCTGTTTCTGATATGGAGCCTAGAGTGGAAGACATGACTCAGGGTGTAGATCAAGGCCTTCATTTGGTCCACTTGTTGTTGGCTTGTGCTGAGGC TTTGAGCTGCAGAGACACACGGCTAGCAGAAACAATGCTCAGCCAAATTTGGCCTTCAGTTAGTCCATGGGGTGATTCTTTGCAGAGGGTTTCTTTTTGC TTCGCTATGGGATTGAAATGTAGATTATCACATCTTAATAATGTGAATGCACATGGGACATTCACAATTGGTGGTGCTATGGATAGATCATTGATCGTTA GGGCAGAGAAAATGGAAGCTTTTCAACTTCTTCATCAAGCAACTCCTTATATCGCTTTTGGTTTCATGGCTGCAAATGAAGCTATATGCCAGGCAGCACA AGAAAAGGACTCTTTGCATATCATTGATCTAGGAATGGAGCACGCCCTTCAGTGGCCTTCTTTGATGAGAATTCTAGCTTCAAGGCCTGAAGGCCCTCCG AAACTCCGAATCACAGGATTGATAGATGGTCATAATCTGTTAGAGCTTGAAGCTAGCATGAAAGAACTTGCCGAGGAAGCTAGCTCATTAGGCATCCGTT TGGAATTTAACTTGGTTTCAGAGCCAGTTTCGCCATTGCTTTTAACTACTGAGAATCTTAACTTGAGAGAAGGGGAGGCATTATTTGTGAATAGCATAAT GCACTTGCACAAGTTCGTGAAAGAGAGTAGAGGCTCCCTCAAGGCAATCCTCCAAGCAATAAAGAAATTAAATCCAACATTGCTTACGGTGGTAGAACAA GACGCAAACCACAATGGTCCCTTCTTTCTTGGAAGATTTATTGAATCTCTTCATTACTACTCTGCCATTTTTGATTCCCTTGAAGCTAGTCTTCCGAGAA ATAGCCCACAGAGGATAAAGATGGAAAAGGTTCAATTTTCTACGGAGATTTGCAATATCATAGCTTATGAAGGTTCTAACAGGATTGAGAGACATGAAAG AGCAGATCAATGGAGAAGGCAATTATCCCGAGCAGGGTTTCAAGTAATGGGGTTGAAATGCATGAGCCAAGCTAGAATGATGCTCTCTGTTTATGGCATT GATGGTTACACTTTAGCCACCGAAAAGGGTTGTCTCCTCCTTGGATGGAAAGGCCGGCCTATCATGCTAGCATCTGCATGGCAAGTGCACAACCTTTTTC CCTCCTAA
AA sequence Show only first row Show all	>Potri.005G095100.1 pacid=42803571 polypeptide=Potri.005G095100.1.p locus=Potri.005G095100 ID=Potri.005G095100.1.v4.1 annot-version=v4.1 MEGMNDWLSFSMHESLNHDLAIRRFCPARMELEQGEECWEEITFSEIELLSPDDDSTSPPHLADSEVDELVDSFINVDQDGNKDDKSFEKDQDFNHLQDD HIEAFSMVNDVFQDVPKMNIEGDELEMSSSFEDLEAVSDMEPRVEDMTQGVDQGLHLVHLLLACAEALSCRDTRLAETMLSQIWPSVSPWGDSLQRVSFC FAMGLKCRLSHLNNVNAHGTFTIGGAMDRSLIVRAEKMEAFQLLHQATPYIAFGFMAANEAICQAAQEKDSLHIIDLGMEHALQWPSLMRILASRPEGPP KLRITGLIDGHNLLELEASMKELAEEASSLGIRLEFNLVSEPVSPLLLTTENLNLREGEALFVNSIMHLHKFVKESRGSLKAILQAIKKLNPTLLTVVEQ DANHNGPFFLGRFIESLHYYSAIFDSLEASLPRNSPQRIKMEKVQFSTEICNIIAYEGSNRIERHERADQWRRQLSRAGFQVMGLKCMSQARMMLSVYGI DGYTLATEKGCLLLGWKGRPIMLASAWQVHNLFPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.005G095100 [exp]	0	1
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.016G113100 [exp]	11.91	0.9691
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.010G125300 [exp]	17.88	0.9686	CUT1.1
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Potri.019G075201 [exp]	22.11	0.9673
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.008G120300 [exp]	25.45	0.9672
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.001G083400 [exp]	26.26	0.9508
AT1G54820			Protein kinase superfamily pro...		Potri.005G036600 [exp]	27.56	0.9672
AT2G01505		CLE16	CLAVATA3/ESR-RELATED 16 (.1)		Potri.008G130800 [exp]	28.46	0.9671
					Potri.017G047500 [exp]	33.25	0.9671
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.006G205500 [exp]	35.62	0.9668
AT1G02260			Divalent ion symporter (.1)		Potri.012G144000 [exp]	36.33	0.9670

Compare expression of checked genes

Potri.005G095100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.