Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrANT1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38250 539 / 0 Transmembrane amino acid transporter family protein (.1) AT2G42005 508 / 4e-180 Transmembrane amino acid transporter family protein (.1) AT5G65990 504 / 4e-178 Transmembrane amino acid transporter family protein (.1) AT3G11900 216 / 1e-65 ANT1 aromatic and neutral transporter 1 (.1) AT5G15240 85 / 9e-18 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 75 / 2e-14 Transmembrane amino acid transporter family protein (.1) AT2G41190 61 / 1e-09 Transmembrane amino acid transporter family protein (.1) AT3G54830 60 / 2e-09 Transmembrane amino acid transporter family protein (.1) AT5G02180 59 / 2e-09 Transmembrane amino acid transporter family protein (.1) AT3G28960 59 / 3e-09 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G167900 [exp] 547 / 0 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G206800 [exp] 545 / 0 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G064500 [exp] 223 / 2e-68 AT3G11900 521 / 0.0 aromatic and neutral transporter 1 (.1) Potri.010G226000 [exp] 67 / 8e-12 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 63 / 2e-10 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 63 / 2e-10 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 61 / 8e-10 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 59 / 2e-09 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G106300 [exp] 57 / 1e-08 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022995 [exp] 517 / 0 AT2G42005 580 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10001390 [exp] 515 / 0 AT2G42005 581 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10026549 [exp] 480 / 1e-168 AT2G42005 548 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10021089 [exp] 208 / 2e-62 AT3G11900 501 / 2e-176 aromatic and neutral transporter 1 (.1) Lus10017224 [exp] 205 / 1e-61 AT3G11900 502 / 3e-177 aromatic and neutral transporter 1 (.1) Lus10013835 [exp] 156 / 4e-46 AT2G42005 178 / 2e-55 Transmembrane amino acid transporter family protein (.1) Lus10012824 [exp] 69 / 1e-12 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10039190 [exp] 64 / 1e-10 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10005099 [exp] 62 / 3e-10 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 59 / 4e-09 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.005G102300.2 pacid=42804721 polypeptide=Potri.005G102300.2.p locus=Potri.005G102300 ID=Potri.005G102300.2.v4.1 annot-version=v4.1 ATGGGATTTGATAAAGAAGCAAGTTCATCTTCACATGTTTTGAAGATACCTCGGTTTCCAAGAGAAGACACCCCTTTATTAAGCAAGAGACCTCCAGTTT CTTCTCAAGGCAAGACCTTTGCAAATGTTTTCATAGCTATAGTTGGTGCAGGAGTTCTTGGCTTACCTTACACTTTCAAGAAAACAGGATGGGTTATGGG CTCTATCATGGTTTTCTCCGTTGCTTTCCTGACTTACTATTGCATGATGTTGTTAGTGCATACTCGTAGAAAGCTTGAATCTTTAGAAGGATTCTCAAAG ATTGCATCTTTTGGTGATCTGGGTTTTACTGTTTGTGGCCCTATAGGTCGTTTTGCTGTTGATATTATGATTGTTCTTGCACAAGCTGGGTTTTGTGTTA GCTATCTTATTTTTATTGCTAACACTTTAGCTTATGTTGTTAATCATCAATCCGGTGATAGAATTTTGGGCTTTTTGAGTCCCAAAGCTTTGTATATATG GGGTTGTTTTCCTTTTCAGTTGGGGTTGAATTCAATTCCAACGTTGACCCATTTGGCCCCACTTAGTATTTTTGCTGATGTTGTTGATCTTGGAGCTATG GGAGTGGTTATGGTAGAGGATGTGATGGTATTTTTGAAAAATAGGCCAGCTTTAGAAGCTTTTGGTGGGTTCTCTGTTTTCTTTTATGGTTTAGGTGTGG CTGTTTATGCCTTTGAGGGAATTGGTATGGTATTGCCATTGGAGACTGAAGCTAAACACAAGGACAATTTTGGTAGAGTGTTGGGGTTATGTATGGCTTT CATTTCTTTGTTGTATGGAGGTTTTGGGGTATTGGGTTACTTTGCTTTTGGTGAAGATACCAAGGATATAATCACTACCAATTTGGGACCTGGACTACTG AGCAATCTTGTGCAGATTGGTTTGTGTGTGAATCTGTTCTTTACATTCCCATTGATGATGAATCCAGTTTATGAAGTGGTGGAGAGAAGGTTTTGTGATT CTAGGTATTCTATATGGCTGAGATGGGTAGTTGTTTTGGGAGTGAGTTTGGTGGCTTTGTTGGTGCCTAATTTTGCAGATTTCTTGTCTCTAGTAGGGAG CAGCGTGTGTTGTATTCTGGGGTTTGTGTTGCCTGCTTTGTTTCATCTGTTGGTGTTCAAGGAAGAGCTGGGTTGGAATGGTTTGCTTTTGGATGGGGCT TTTGTGGTTTTTGGTGTCATCATTGCTGTCACCGGTACCTGGTCTTCCTTGATGGAGATATTTGCATCCAAGACCTCTTGA
AA sequence Show only first row Show all	>Potri.005G102300.2 pacid=42804721 polypeptide=Potri.005G102300.2.p locus=Potri.005G102300 ID=Potri.005G102300.2.v4.1 annot-version=v4.1 MGFDKEASSSSHVLKIPRFPREDTPLLSKRPPVSSQGKTFANVFIAIVGAGVLGLPYTFKKTGWVMGSIMVFSVAFLTYYCMMLLVHTRRKLESLEGFSK IASFGDLGFTVCGPIGRFAVDIMIVLAQAGFCVSYLIFIANTLAYVVNHQSGDRILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADVVDLGAM GVVMVEDVMVFLKNRPALEAFGGFSVFFYGLGVAVYAFEGIGMVLPLETEAKHKDNFGRVLGLCMAFISLLYGGFGVLGYFAFGEDTKDIITTNLGPGLL SNLVQIGLCVNLFFTFPLMMNPVYEVVERRFCDSRYSIWLRWVVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLLVFKEELGWNGLLLDGA FVVFGVIIAVTGTWSSLMEIFASKTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38250			Transmembrane amino acid trans...		Potri.005G102300 [exp]	0	1	PtrANT1
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.010G097800 [exp]	11.53	0.7961
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047200 [exp]	13.71	0.8119
AT5G01830			ARM repeat superfamily protein...		Potri.006G107600 [exp]	15.65	0.8365
AT3G20340			unknown protein		Potri.011G139400 [exp]	40.80	0.7978
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047300 [exp]	43.01	0.7692
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030626 [exp]	50.99	0.7920
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Potri.001G331100 [exp]	52.30	0.7961	CYP94.2
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.006G115000 [exp]	58.82	0.7960
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044200 [exp]	58.86	0.7790
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.008G014700 [exp]	68.11	0.7763	Pt-CPK2.2

Compare expression of checked genes

Potri.005G102300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.