Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38620 277 / 8e-94 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 269 / 5e-91 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G34990 264 / 8e-89 MYB ATMYB32 myb domain protein 32 (.1) AT4G09460 255 / 5e-86 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G22640 253 / 7e-85 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT1G35515 234 / 5e-78 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT5G16770 218 / 4e-70 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 214 / 2e-68 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 213 / 5e-68 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 206 / 7e-66 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174400 [exp] 305 / 4e-105 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.009G134000 [exp] 301 / 1e-103 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.019G081500 [exp] 261 / 1e-87 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.013G109300 [exp] 258 / 4e-86 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.T011525 [exp] 252 / 2e-83 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011400 [exp] 252 / 2e-83 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.004G138000 [exp] 252 / 2e-83 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.010G114000 [exp] 224 / 9e-74 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.004G088100 [exp] 216 / 3e-70 AT4G09460 227 / 5e-75 myb domain protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016948 [exp] 263 / 2e-88 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10001548 [exp] 261 / 2e-87 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10000411 [exp] 261 / 2e-87 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10028435 [exp] 258 / 3e-87 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10009448 [exp] 259 / 4e-87 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10041888 [exp] 250 / 4e-84 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10014129 [exp] 264 / 2e-83 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10033473 [exp] 231 / 2e-76 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10018418 [exp] 210 / 9e-67 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 206 / 2e-66 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G112000.2 pacid=42805492 polypeptide=Potri.005G112000.2.p locus=Potri.005G112000 ID=Potri.005G112000.2.v4.1 annot-version=v4.1 ATGGGGAGATCTCCATGCTGTGAGAGAGCGCACACCAACAAAGGGGCATGGACTAGAGAAGAAGATAAGCGTCTCGTTGCTTATATCCAAGCTCATGGTG AGGGTTGCTGGAGGTCCCTGCCAAAATCAGCTGGCCTTCTTCGTTGTGGAAAGAGTTGCCGTCTTCGATGGATCAACTATCTACGCCCTGATCTTAAGCG TGGGAATTTTACTGAAGAAGAGGATGAGCTCATTATCAAACTCCACAGCCTCCTTGGTAATAAGTGGTCTCTCATAGCGGGGAGGCTACCAGGAAGGACA GATAACGAGATCAAGAACTATTGGAATACCCATATAAGAAAAAAGCTGCTGAGCAGAGGAATTGACCCTTCGACTCATCGACCAATCAATGAATTAGCCA TTGACAGCATGACCACCTCTCTCGGTGCAGTTCTGAAAGAAGGGATCACTTCTGGCTTTGGGTGCAAAAACCAGAAGAACCCAACTGGAGAAAAGTGTCA GGAATTGAATCTTGAGCTGAGGATATGCCCTCCCTATCAGCACCCAACTCAGTCAATGGAGAGCATAGGCAGGAAAATAATGTGTTTCTACTGCAGCTTA GGATTGAAAAACAGCAAGGATTGCAGTTGCAGTAATGACAGTGACGATTTCCTTGTTATGAAGAACGGTGCTCTGGATTACAGAAGGCAGAAAGCGAAGA GAGATTCTGAAGTCGGCTTATTTATTGTGAATAGATAA
AA sequence Show only first row Show all	>Potri.005G112000.2 pacid=42805492 polypeptide=Potri.005G112000.2.p locus=Potri.005G112000 ID=Potri.005G112000.2.v4.1 annot-version=v4.1 MGRSPCCERAHTNKGAWTREEDKRLVAYIQAHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRT DNEIKNYWNTHIRKKLLSRGIDPSTHRPINELAIDSMTTSLGAVLKEGITSGFGCKNQKNPTGEKCQELNLELRICPPYQHPTQSMESIGRKIMCFYCSL GLKNSKDCSCSNDSDDFLVMKNGALDYRRQKAKRDSEVGLFIVNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.005G112000 [exp]	0	1
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Potri.019G045900 [exp]	5.29	0.8895
					Potri.016G121650 [exp]	5.47	0.9178
AT1G27370	SBP	SPL10	squamosa promoter binding prot...		Potri.014G057800 [exp]	8.48	0.8696
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Potri.011G122400 [exp]	8.66	0.8629	Pt-PORA.1
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	13.74	0.8754
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	16.52	0.8645
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	17.91	0.8959
AT4G24275			unknown protein		Potri.003G006100 [exp]	21.81	0.8401
					Potri.017G095500 [exp]	24.26	0.8508
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Potri.008G133800 [exp]	26.15	0.8279	Pt-CABP1.1

Compare expression of checked genes

Potri.005G112000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.