Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPP13.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50950 1004 / 0 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 261 / 1e-74 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 257 / 7e-73 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 254 / 5e-72 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 249 / 4e-70 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 244 / 1e-68 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59124 244 / 1e-68 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59620 243 / 3e-68 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 242 / 2e-67 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58602 243 / 3e-67 LRR and NB-ARC domains-containing disease resistance protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G129800 [exp] 535 / 4e-179 AT3G50950 493 / 7e-163 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.016G092600 [exp] 513 / 1e-169 AT3G50950 483 / 4e-158 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.006G014400 [exp] 490 / 9e-161 AT3G50950 435 / 1e-139 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.003G149800 [exp] 303 / 9e-90 AT5G43470 421 / 4e-133 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Potri.018G013500 [exp] 300 / 2e-88 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 302 / 7e-88 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 290 / 2e-84 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 290 / 1e-83 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 287 / 1e-83 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 278 / 3e-80 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 275 / 5e-79 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 266 / 6e-75 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 252 / 6e-71 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 249 / 4e-70 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 253 / 6e-70 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 250 / 8e-70 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 248 / 1e-69 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 246 / 1e-68 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 243 / 2e-67 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.005G119800.1 pacid=42803701 polypeptide=Potri.005G119800.1.p locus=Potri.005G119800 ID=Potri.005G119800.1.v4.1 annot-version=v4.1 ATGGTGGATGCTGTGGTCACTGTGTTTTTGGAAAGGCTACTGAACACTCTTGTAGAAGAAGGACGTGTAGTAAATGAATTCCGGGACCAGTTTGAGAAAT TGCAGGATGAGCTGCAATTAATGCAATGCTTCCTCAAAGATGCAGATAAACAGAAGAGGAAGAATCAAACTCTGCATGGGATCATGGCCAAATTGCGCGA GCTTATTTATGAATCTGAAGATATACTAGCAGACTGCCAACTTCAATCAAGGGAGGATAATCAATTTTCAAATGGTTGCTTAGCACGTATCTATCCTCCA AATCTTCATTTTCAAAATCAAACTGGAAAGCGGCTGAGGAAAATCAATGAAAAAATCACAGACATTAAGCAAAGCATCATGTCTTATCTTGGTCCTTCAA TTACTAATGATATGGGGAGAATAGATGCATGCAATGACCAAATGCCTAGATGGAGCTCTCCTGTCTATGACCACACCCAAGTGGTTGGGCTGGAGGATGA CACGAAAAAGATTAAAGATTGGCTTTATAATGCAGATGTGGGCATACTAAAAATTGGCATTGTTGGTATGGGTGGATTAGGTAAGACCACAATTGCTCAA ATGGTCTTCAATGATAGAGAAATAGAGGACAGGTTTGAGAGAAGAATGTGGATATCTGTTTCTCAATCATTTGATGAAGAACAAATCATGAGAAGTATGC TGAGAACCTTGGGAGATGCAAGTGTAGGAGATGATCGAGGTGAATTGTTGAGGAAAATAAACCAGTACCTTTTAGGTAAGAGGTACTTGATTGTGATGGA TGATGTATGGAGTTTAGATGGCAATTGGTGGAGCAGAATCTCTGAAGGGTTGCCCAAGGGTAATGGAAGTAGTGTTATCATCACTACAAGACTCGTGGAA GTCTTAACAAAGATGGAAGTGAGTAAAGCCAGGATGCATAAGCCCGATATCCTCAACAGCAATAATAGCTGGTTGCTATTTAGAAAGATAGCATTTGCAG CAAGTGGAGGTGACTGCACAAAACCTGAGTTAGAAAAGATTGGCAAGGAGATTGTGCAAAAATGTAATGGTCTTCCCTTAGCAATCAAAGCAATTGGAGG AATGTTGCTCTATAAATCACATTATCATGAGTGGAAACGAATTGCAGACAACTTTCGAGATGAATTAGGAGAAAATGATGACACGGTAATGCCCTCACTT CAATTGAGTTATGATGAGCTCCCCCCATACCTGAAGTCTTGCTTCTTGAGTTTCTCTCTGTATCCAGAGGATTGTGTTGTGACAAAAGAGCAATTGGTCC ATTGGTGGATTGGAGAGGGATTTGTACCGCTAAGAAGTGGAAGACCATCAACTGAAGCTGGGGAAGATTGTTTCTCAGGGTTAACAAATCGATGTTTGGT AGAAGTTGTTGAAAAGACTTACAATGGAACTATCCTCACCTGCAAGATTCATGATATGGTTCGTGAATTGGTTATCAAAATGGCTGAAAATGAAGCATTC TTTAAAGTTACTGGTAGAGGCTGCCGCCATTTTGGAATTGACACCAAAATGGATCCAAAGCAACTTGCTGCCAATCACAAGTTACGAGCATTGTTGTCCA CGACCAAGACCGGTGAAGTGAACAAGATATCATCAAGCATTGCAAACAAGTTCAGTGAGTGCAAATACTTGCGAGTCTTAGATCTTTGCAAATCAATTTT CGAAATGTCTCTCACAAGTCTATTGTCTCATATTGGTTTCCTTCAGCACTTGACATACCTTAGCTTAAGCAACACCCATCCTTTGATTCAACTCCCACCT TCACTTGAGAACCTCAAAAACCTTGAGATATTGAACGTGAGTTATAGTCAAAATCTGAAAGTATTGCCTCCTTATCTCACAAAATTTAAGAAACTCAGGG TCTTAGATGTTAGTCACTGTGGCTCACTTGAATACTTACCTAAAGGCTTAGGAAGGCTTTCAAATCTTGAAGTTCTTTTGGGATTTAGACCTGCGAGAGC AAGCCAGTTAGACGGATGTCGGATTGCAGAGTTGAGAAAATTGAGTCGACTTAGGAAACTTGGTCTACACCTAGTTTGGGTTGATGAGATTGGAGATAGT GAGGTCAGTGCTTTGGTAAACCTTCAACAACTTCAATTCCTAACAATAAGTTGCTTTGATAGCCATGGTAGTGGTCTTGTAGATAAACTTGATAAACTCT ACCCTCCACCGGAGCTCCATGAGCTCTGTCTCCAATTTTATCCGGGGAAGCTAAGTCCTGCCTGGCTCAATCCCATTTCACTTCATATGTTAAGATATCT CTGGATATCCTCTGGAAATCTTGCTATGATGGATGAAGCCTTTTTTGGAGAGAATAATAGTGCATGGAAAATTGAGGGATTGATGTTGGAATCTCTCTCA GATTTAGAAATGGAGTGGAAAATGGTGCAACAAGTGATGCCATCTCTGAAAATCGTAAATGCAAGCTGGTGTCCAAATTTGGTGTCTTTCCCCATTGAAG ATGTTGGGTTTAGAGGGGGGGTTTGGGCAAAGGGTGAAAACCGGAGGTAA
AA sequence Show only first row Show all	>Potri.005G119800.1 pacid=42803701 polypeptide=Potri.005G119800.1.p locus=Potri.005G119800 ID=Potri.005G119800.1.v4.1 annot-version=v4.1 MVDAVVTVFLERLLNTLVEEGRVVNEFRDQFEKLQDELQLMQCFLKDADKQKRKNQTLHGIMAKLRELIYESEDILADCQLQSREDNQFSNGCLARIYPP NLHFQNQTGKRLRKINEKITDIKQSIMSYLGPSITNDMGRIDACNDQMPRWSSPVYDHTQVVGLEDDTKKIKDWLYNADVGILKIGIVGMGGLGKTTIAQ MVFNDREIEDRFERRMWISVSQSFDEEQIMRSMLRTLGDASVGDDRGELLRKINQYLLGKRYLIVMDDVWSLDGNWWSRISEGLPKGNGSSVIITTRLVE VLTKMEVSKARMHKPDILNSNNSWLLFRKIAFAASGGDCTKPELEKIGKEIVQKCNGLPLAIKAIGGMLLYKSHYHEWKRIADNFRDELGENDDTVMPSL QLSYDELPPYLKSCFLSFSLYPEDCVVTKEQLVHWWIGEGFVPLRSGRPSTEAGEDCFSGLTNRCLVEVVEKTYNGTILTCKIHDMVRELVIKMAENEAF FKVTGRGCRHFGIDTKMDPKQLAANHKLRALLSTTKTGEVNKISSSIANKFSECKYLRVLDLCKSIFEMSLTSLLSHIGFLQHLTYLSLSNTHPLIQLPP SLENLKNLEILNVSYSQNLKVLPPYLTKFKKLRVLDVSHCGSLEYLPKGLGRLSNLEVLLGFRPARASQLDGCRIAELRKLSRLRKLGLHLVWVDEIGDS EVSALVNLQQLQFLTISCFDSHGSGLVDKLDKLYPPPELHELCLQFYPGKLSPAWLNPISLHMLRYLWISSGNLAMMDEAFFGENNSAWKIEGLMLESLS DLEMEWKMVQQVMPSLKIVNASWCPNLVSFPIEDVGFRGGVWAKGENRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.005G119800 [exp]	0	1	RPP13.1
AT4G23810	WRKY	ATWRKY53, WRKY5...	WRKY family transcription fact...		Potri.014G096200 [exp]	1.00	0.9488
AT2G46400	WRKY	ATWRKY46, WRKY4...	WRKY DNA-binding protein 46 (....		Potri.002G168700 [exp]	2.44	0.9456
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.001G167700 [exp]	4.47	0.9470	LOX3.1
AT5G66900			Disease resistance protein (CC...		Potri.007G039000 [exp]	5.00	0.9326
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Potri.008G117300 [exp]	7.48	0.9204
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226400 [exp]	8.00	0.9327
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.006G202200 [exp]	8.48	0.9000	SYP121.2
AT3G48080			alpha/beta-Hydrolases superfam...		Potri.012G074700 [exp]	10.24	0.8980	Pt-EDS1.3
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Potri.002G172101 [exp]	10.48	0.9180
AT3G18670			Ankyrin repeat family protein ...		Potri.006G062900 [exp]	11.31	0.9029

Compare expression of checked genes

Potri.005G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.