Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G18193 484 / 2e-168 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 477 / 1e-165 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 474 / 1e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 470 / 3e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 473 / 1e-162 BCS1 cytochrome BC1 synthesis (.1) AT3G50940 457 / 2e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 401 / 3e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G43910 370 / 1e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 354 / 1e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020800 [exp] 837 / 0 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 564 / 0 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 533 / 0 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G177200 [exp] 498 / 2e-173 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 473 / 4e-164 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.010G057900 [exp] 431 / 4e-148 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1) Potri.002G032700 [exp] 427 / 2e-146 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 412 / 2e-139 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.007G019600 [exp] 405 / 3e-137 AT1G43910 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015802 [exp] 486 / 3e-169 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 482 / 9e-168 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10003213 [exp] 455 / 3e-156 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 451 / 3e-155 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10024275 [exp] 423 / 4e-144 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 405 / 4e-137 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 384 / 2e-130 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10031318 [exp] 371 / 2e-123 AT2G18193 415 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041918 [exp] 370 / 1e-122 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10014496 [exp] 350 / 1e-115 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.005G119900.2 pacid=42805124 polypeptide=Potri.005G119900.2.p locus=Potri.005G119900 ID=Potri.005G119900.2.v4.1 annot-version=v4.1 ATGTTTTCTGGCAAAGAGTTTCCTTCTTCATCATCATTCTTGGCTGCCTATGCCTCCATGGCTGGTTCCATAATGATGGCTCAATCCATCGCCAATCAAC TAAGCCATCTCATACCCCACCATGTCAGAAGCTACCTTTCATCAACTCTTCGTTACTTCTTTAAGCCTCAATCTCCTATTCTTACCTTAGTCATTGACGA ATCCACAGGAATTGCTCGAAACCAAGTGTATGATGCATCCGAGACTTACTTGTGCACTAAGGTTAGTCCCAATACAAAAAGGCTCAAAATTAGCAAAACC CCAACAGAGAAGAATTTGACGATCAAGCTTGAAAAGGGTGAGAAAATCGTTGATAATTATGAAGGGGTTGAGCTTCAGTGGAGATTAGTATTTGCAGAAG CTGAAAAGAATGACTCCCACAATCCCTTTCAACCAAGGAATGTTGAGAAACGATGGTTCGAGCTAAGCTTCCACAGGGATCATAAGGAGACAATACTGGG GTCTTACATCCCTTATATTCTTGAAAGGGCAAAATCCATAAAAGAAGAAGTAAGAGTCTTGAAGATGCACACTCTTAACAATTCACAAGGCTATGGAGGA ATCAAATGGGAGTCCATAAATCTTGAACATCCAGCAACGTTTGAGACTTTGGCTATGGAGCCAGACCTGAAAAATATTGTTATAGAGGATTTGAATAGAT TTGTCAAGAGGAAGGATTTTTATAAGAGAGTAGGGAGGGCTTGGAAACGTGGGTACTTGCTATATGGGCCACCAGGGACTGGCAAATCAAGCTTGGTTGC TGCCATGGCTAATCACTTAAAGTTTGATGTGTATGATTTGCAGCTTGCAAATATAATGCGGGATTCTGACCTGAGAAGATTGTTCCTGGCAACTGGGAAT AGATCGATACTTGTGATTGAAGATATTGATTGTAGTCTGGATTTGCCTGATCGAAGACAGGTTTCTAAAGATGGAGATGGTCGAAAACAGCACGATGTGC AGTTGACACTGTCCGGCTTACTTAACTTCATAGATGGATTATGGTCTAGTTGCGGGGATGAAAGAATCATCATATTTACCACCAACCATAGAGATAGGCT AGACCCTGCTCTGTTGCGTCCGGGACGCATGGACATGCACATTCACATGTCCTACTGCACAACTCATGGGTTTAGAGTGCTGGCCTCCAATTACCTGGGC ATTAATGGTTATCATACACTCTTTGGAGAAATCGAGGACCTGATTAAAACTACAGAGGTCACCCCTGCACAAGTGGCAGAGGAGCTAATGAAGAGTGAAG ATTCAAATATTGCACTTGAAGGGGTTGTGAAACTACTGAAGAGGAAGAAACTGGAAGGCGATGAACTTTTCGATGAAGGTGCTAAAAAGGTTGGGATTCA AGAAGCAAAAAGGCAGAAAGTTGAGAACAAGCGTAGAGTATCAGTTAGAATTAACAGCGGAAAGAAGACCAACAAGAGAAGATGTTCCTAA
AA sequence Show only first row Show all	>Potri.005G119900.2 pacid=42805124 polypeptide=Potri.005G119900.2.p locus=Potri.005G119900 ID=Potri.005G119900.2.v4.1 annot-version=v4.1 MFSGKEFPSSSSFLAAYASMAGSIMMAQSIANQLSHLIPHHVRSYLSSTLRYFFKPQSPILTLVIDESTGIARNQVYDASETYLCTKVSPNTKRLKISKT PTEKNLTIKLEKGEKIVDNYEGVELQWRLVFAEAEKNDSHNPFQPRNVEKRWFELSFHRDHKETILGSYIPYILERAKSIKEEVRVLKMHTLNNSQGYGG IKWESINLEHPATFETLAMEPDLKNIVIEDLNRFVKRKDFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANHLKFDVYDLQLANIMRDSDLRRLFLATGN RSILVIEDIDCSLDLPDRRQVSKDGDGRKQHDVQLTLSGLLNFIDGLWSSCGDERIIIFTTNHRDRLDPALLRPGRMDMHIHMSYCTTHGFRVLASNYLG INGYHTLFGEIEDLIKTTEVTPAQVAEELMKSEDSNIALEGVVKLLKRKKLEGDELFDEGAKKVGIQEAKRQKVENKRRVSVRINSGKKTNKRRCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17760			P-loop containing nucleoside t...		Potri.005G119900 [exp]	0	1
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Potri.001G281000 [exp]	1.00	0.8474
					Potri.001G062100 [exp]	4.89	0.8311
AT2G47115			unknown protein		Potri.014G115200 [exp]	6.48	0.8343
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	9.00	0.8342
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Potri.004G095400 [exp]	9.53	0.7920	LPP3.2
AT5G23170			Protein kinase superfamily pro...		Potri.004G221800 [exp]	10.90	0.8082
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Potri.017G109600 [exp]	10.95	0.8165
AT5G16290		VAT1	VALINE-TOLERANT 1 (.1.2)		Potri.008G078800 [exp]	12.12	0.7577
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.007G112600 [exp]	13.26	0.7892
AT5G17760			P-loop containing nucleoside t...		Potri.007G020800 [exp]	14.69	0.7799

Compare expression of checked genes

Potri.005G119900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.