Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36580 284 / 4e-89 AAA-type ATPase family protein (.1) AT2G18330 281 / 4e-88 AAA-type ATPase family protein (.1) AT5G16930 213 / 5e-62 AAA-type ATPase family protein (.1) AT3G03060 202 / 3e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023900 [exp] 345 / 2e-112 AT4G36580 868 / 0.0 AAA-type ATPase family protein (.1) Potri.011G143300 [exp] 211 / 2e-61 AT5G16930 896 / 0.0 AAA-type ATPase family protein (.1) Potri.001G458200 [exp] 211 / 4e-61 AT3G03060 910 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028305 [exp] 304 / 1e-96 AT2G18330 920 / 0.0 AAA-type ATPase family protein (.1) Lus10041751 [exp] 294 / 8e-93 AT2G18330 915 / 0.0 AAA-type ATPase family protein (.1) Lus10031787 [exp] 207 / 4e-60 AT3G03060 985 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031211 [exp] 178 / 2e-49 AT3G03060 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF12037 [poplar] [flax] DUF3523 Domain of unknown function (DUF3523)
Representative CDS sequence Show only first row Show all	>Potri.005G122300.2 pacid=42803054 polypeptide=Potri.005G122301.1.p locus=Potri.005G122300 ID=Potri.005G122300.2.v4.1 annot-version=v4.1 ATGAAGTTATCCGACTCCTCGTTTCGCTTCAATCCTTTCTCTTCTTCTCCTTCACAGCAGCAACAACAAGCGGGTCAAACAGCGAATCCGAAATCCGATG CTAAACCTGAACCTGAAGACCCGAAAGGGGCGGGTTTTGACCCGGAGGCTTTGGAGAGAGGGGCTAAAGCTCTTCGTGAAATTAATAGCGCTCTACACGC TAAACAGGTTTTTGATGTTATGAGGAAGCAAGAGCAGTCACGATTGGCAGAAGTTGCGGCGGAGAAATCTCATTATGAAGTAATTCAAGCTCAAATTGAT ATTGACAGGCAGCGGAAATTACATGAAGAACAAAGAAATCTGATTCAGCAACAGGCACAGGCAAAGGTGCTAATGTTGCGGCACGGGGATGAGTTGGCAA GGAAAAGAATGCAGACAGATCATGATGCTCAGAGGCAACATAATGTTGAATTGGTTAAGATGCAGGAGGAGTCTTCAATACTAAAAGAACAAGTGAGACG GGCTACCGAGGAGCAGATCCAGGCTCAACAATGTCAGACTGAGAAAGAGAGAGCTGAAATAGAACGGGAGAGACAATTAGAACGAATGCTAATTGAACAC ATAAATGGTGAAAGAGAAAAATGGCTTGCTTCAACCTTTAGTCACATTGAAGTGGTTTGGTTATGTGTGGAATTAGACACTTGTTCAAAATTGATTATGA CTGTTGGAGGAGCTACCACATTGGCTGCAGGAATTTACACAACCAGGTTTTCTGAAGGGCTTTGTTTGACTCTCTATGCAATTTGGGGTTCTTTGGAGGA TCTAATTAAAGCCAAGGCTTGTTGGAAAATGGATGGGATATATCAAAATCAACACAACATGTGCGTAATAATCTCTATGGGTTTGGGTTATGCCATGATG ACAGGAGGAGACGTTGCACCTCTAGGAGCAGAAGCTGTTACTAAAATCCATAAGATATTTGATTGGGCTAAGAAGTCACAGAAAGGCTTGCTGCTTTTTA TTGACAAGGCGGATGCTTTCCTAAGCGAGCGTAACAGTATGCATATGAGCGAAGCTCAGACTGTACTTGTCCTTGCTACAAACAGGCCAGGTGATCTTGA TAGTGCTATTACTGATTGTATCGATGAAGAGCGGTTTAAATTGCTCAACCTGTATCTGAGCAATTATCTTTCTAGTGAAGGGGACAATGGGTCTGGTAGG GGATCTTTGTTCAAGAGGCCACAAAAAATAACCGTCAATGATATCTCTGAAGATGTGATCCGAGAGGCTGCTAAAAAAACAGAAGGGTTCTCTGGACGTG AGATAGCCAAACTATTTAGTGAGATTGTAGATTACAAGGTTGCAGAGCATAATCAAACCCAACGATTCGTACCATCTCAAAATCAATACTGA
AA sequence Show only first row Show all	>Potri.005G122300.2 pacid=42803054 polypeptide=Potri.005G122301.1.p locus=Potri.005G122300 ID=Potri.005G122300.2.v4.1 annot-version=v4.1 MKLSDSSFRFNPFSSSPSQQQQQAGQTANPKSDAKPEPEDPKGAGFDPEALERGAKALREINSALHAKQVFDVMRKQEQSRLAEVAAEKSHYEVIQAQID IDRQRKLHEEQRNLIQQQAQAKVLMLRHGDELARKRMQTDHDAQRQHNVELVKMQEESSILKEQVRRATEEQIQAQQCQTEKERAEIERERQLERMLIEH INGEREKWLASTFSHIEVVWLCVELDTCSKLIMTVGGATTLAAGIYTTRFSEGLCLTLYAIWGSLEDLIKAKACWKMDGIYQNQHNMCVIISMGLGYAMM TGGDVAPLGAEAVTKIHKIFDWAKKSQKGLLLFIDKADAFLSERNSMHMSEAQTVLVLATNRPGDLDSAITDCIDEERFKLLNLYLSNYLSSEGDNGSGR GSLFKRPQKITVNDISEDVIREAAKKTEGFSGREIAKLFSEIVDYKVAEHNQTQRFVPSQNQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36580			AAA-type ATPase family protein...		Potri.005G122300 [exp]	0	1
AT5G07890			myosin heavy chain-related (.1...		Potri.015G048900 [exp]	1.41	0.8035
AT4G24900			unknown protein		Potri.012G098000 [exp]	2.64	0.8178
AT5G13590			unknown protein		Potri.008G047600 [exp]	19.36	0.6966
AT3G19895			RING/U-box superfamily protein...		Potri.008G085700 [exp]	19.51	0.7990
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.009G155400 [exp]	20.34	0.7565
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080800 [exp]	21.97	0.7016
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Potri.006G235400 [exp]	22.91	0.7516
					Potri.003G193100 [exp]	24.65	0.6865
AT3G09850			D111/G-patch domain-containing...		Potri.006G189501 [exp]	30.19	0.7443
AT5G63200			tetratricopeptide repeat (TPR)...		Potri.012G092000 [exp]	30.33	0.6993

Compare expression of checked genes

Potri.005G122300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.