Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36710 466 / 1e-160 GRAS AtHAM4 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) AT4G00150 196 / 1e-55 GRAS ATHAM3, SCL6, LOM3 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) AT2G45160 175 / 2e-47 GRAS ATHAM1, LOM1 LOST MERISTEMS 1, ARABIDOPSIS THALIANA HAIRY MERISTEM 1, GRAS family transcription factor (.1) AT3G60630 164 / 1e-43 GRAS ATHAM2, LOM2 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) AT5G41920 117 / 3e-28 GRAS GRAS family transcription factor (.1) AT1G14920 106 / 3e-24 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 104 / 2e-23 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G54220 100 / 3e-22 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT2G01570 100 / 6e-22 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G66350 98 / 2e-21 GRAS RGL1 RGA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029200 [exp] 920 / 0 AT4G36710 419 / 4e-142 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.003G110800 [exp] 201 / 7e-56 AT4G00150 366 / 2e-117 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.002G144200 [exp] 199 / 1e-55 AT4G00150 411 / 2e-135 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060500 [exp] 197 / 4e-55 AT4G00150 429 / 8e-143 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.001G122800 [exp] 197 / 1e-54 AT4G00150 376 / 1e-121 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060200 [exp] 193 / 1e-53 AT4G00150 420 / 2e-139 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.002G144700 [exp] 185 / 1e-50 AT4G00150 437 / 2e-145 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.001G326000 [exp] 131 / 4e-32 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.002G086100 [exp] 110 / 2e-25 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024029 [exp] 596 / 0 AT4G36710 452 / 4e-155 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Lus10041721 [exp] 582 / 0 AT4G36710 456 / 1e-156 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Lus10004353 [exp] 228 / 6e-66 AT4G00150 390 / 2e-127 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10028934 [exp] 227 / 1e-65 AT4G00150 397 / 7e-130 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10012554 [exp] 143 / 5e-36 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10041540 [exp] 142 / 1e-35 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10017626 [exp] 110 / 2e-25 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033583 [exp] 108 / 9e-25 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10016496 [exp] 107 / 4e-24 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10008316 [exp] 106 / 5e-24 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.005G125800.1 pacid=42803530 polypeptide=Potri.005G125800.1.p locus=Potri.005G125800 ID=Potri.005G125800.1.v4.1 annot-version=v4.1 ATGAAAGTTCCAGCTCCCTCACCACAAAACAGCAGCAGCAGCAACAACCAGTCTCAAAACCCGAAACCAGTTTCTTGCAACAACACCAACAATAACAGCA GGAACATCAGCTTTAACCCCAGCAATCGAAACTTGTGCTACGAACCCACATCGGTTCTTGACTTGCGTAGAAGTCCAAGTCCTGCACGAGCTGGCAAACC GGCCTCTGCAACCGATCCTATCGAGTGGGAAGATCATGTCTTGCAAACTTTGGATTGGGATTCTATTATGAGAGAGTTGGACTTCCATGATGATTCTGCT CCTGCTCTCATCAAGAATTTTCCACAATTCGGTCCTTGCAGTGAGCCTCAAATTCAAAGTCATAACCTTCCTGAGTTCACTGCATCTCAACAGATTGATG CTACTCAGTTTCTTAACTCTGAGTTTAATGATATGTACATCAATTCTATCCCAACTCACAATTTGACTTCTCTTGATTTGTCCCATAGTTTTCATAACAA TATTGGAAATTGGAATGCTGGTTCTGATTTCATTCAAGAGCTTATCAAAGCAGCAGACTGTTTTGACTCAAACGAGCTACAAGTTGCGCAAGTGATATTG GAACGGCTCAATCATCGCCATCAATCACCAAACGGTAAACCACTCCAAAGAGCCGCTTTTTTCTTCAAAGAAGCTCTCCAGTCTCTCCTTACAACTGGAT CAACACGGCCACAAACTAATCCTGTAGTCCCTTCATGGTCCAATACTGTCCAAACTATTAAGGCTTACAAGGCCTTCTTTAGCATCTCTCCAATCCCCAT GTTCACTGACTTCACCACCAACCAAGCTATTCTTGATTCCCTTAATGGAAATTCAGTGTTTCTTCATGTCATAGATTTTGATATTGGATTTGGCTGCCAC TATGCTTCTTTGATGAGAGAACTTGTAGACAAAGCAGACTCATGCAATAAGATCACAACTCCGCTTCTTCGAATCACTGCGGTTGTAACAGAAGATACTG TGATTGGGACCAAATTGATCAAAGAAAGACTCTCACAATTCGCCCATGAACTCAAGATCAGATTCCATGTCGAGTTTGTTCTTTTCCCTACCTTCGAAAT GTTGTCTTTCAAAGCAATCAAGTTTTTTGAAGGGGAGAAAATTGCGGTTCTCTTATCCCCAACAATATTTCGCCATCTTGGTTCAACAAATAATGTTACT ATGTTTGTTAATGATTTCCGCCGAGTTTCGCCAAGTGTAGTCATATTTGTGGACAGTGAAGGGTGGACAGAATCTGGAGCTAGATTGTCATTCAGGAGGA ACTTTGTCAATTGTCTTGAATTTTATTCAATGATGTTTGAGTCCCTGGATGCGGCCGTGATTACAGCTGGTGGCGATTGGGCGAGGAAAATTGAGATGTG CCTGCTGAAACCGAAGATTTTGGCGGCAGTTGAGGGGTGCGGAAGGCGAATGGTGTCTCCATGGAGGGAGGTATTTGCTGGGGCAGGAATGAGGGCAGTG CAGTTGAGTCAGTTTGCTGATTTTCAAGCTGAGTGTTTGCTGGGAAAGGTGCAAGTGAGAGGTTTCTATGTGGCAAAACGGCAGGCTGAGTTGGTTCTTT GCTGGCATGATAGGCCACTTATTGCTACATCCGCTTGGAAGTGTTAG
AA sequence Show only first row Show all	>Potri.005G125800.1 pacid=42803530 polypeptide=Potri.005G125800.1.p locus=Potri.005G125800 ID=Potri.005G125800.1.v4.1 annot-version=v4.1 MKVPAPSPQNSSSSNNQSQNPKPVSCNNTNNNSRNISFNPSNRNLCYEPTSVLDLRRSPSPARAGKPASATDPIEWEDHVLQTLDWDSIMRELDFHDDSA PALIKNFPQFGPCSEPQIQSHNLPEFTASQQIDATQFLNSEFNDMYINSIPTHNLTSLDLSHSFHNNIGNWNAGSDFIQELIKAADCFDSNELQVAQVIL ERLNHRHQSPNGKPLQRAAFFFKEALQSLLTTGSTRPQTNPVVPSWSNTVQTIKAYKAFFSISPIPMFTDFTTNQAILDSLNGNSVFLHVIDFDIGFGCH YASLMRELVDKADSCNKITTPLLRITAVVTEDTVIGTKLIKERLSQFAHELKIRFHVEFVLFPTFEMLSFKAIKFFEGEKIAVLLSPTIFRHLGSTNNVT MFVNDFRRVSPSVVIFVDSEGWTESGARLSFRRNFVNCLEFYSMMFESLDAAVITAGGDWARKIEMCLLKPKILAAVEGCGRRMVSPWREVFAGAGMRAV QLSQFADFQAECLLGKVQVRGFYVAKRQAELVLCWHDRPLIATSAWKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	0	1
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.011G021800 [exp]	3.16	0.9618
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	3.74	0.9581
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.015G103800 [exp]	4.47	0.9572	LJLCB2.1
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Potri.009G066000 [exp]	5.29	0.9501
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.014G107200 [exp]	5.29	0.9538
AT1G79600			Protein kinase superfamily pro...		Potri.002G000100 [exp]	5.47	0.9560
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.001G250500 [exp]	7.14	0.9580
AT1G07040			unknown protein		Potri.008G194800 [exp]	7.34	0.9529
AT4G28600		NPGR2	no pollen germination related ...		Potri.002G259300 [exp]	8.24	0.9397
AT2G23840			HNH endonuclease (.1)		Potri.013G059500 [exp]	8.36	0.9523

Compare expression of checked genes

Potri.005G125800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.