Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 466 / 2e-161 GRAS GRAS family transcription factor (.1) AT5G41920 186 / 9e-54 GRAS GRAS family transcription factor (.1) AT3G03450 184 / 9e-52 GRAS RGL2 RGA-like 2 (.1) AT5G17490 180 / 2e-50 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 178 / 1e-49 GRAS RGL1 RGA-like 1 (.1) AT3G54220 179 / 2e-49 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT2G01570 169 / 9e-46 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G66770 167 / 3e-45 GRAS GRAS family transcription factor (.1) AT1G55580 159 / 2e-43 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT3G50650 160 / 7e-43 GRAS SCL7 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086100 [exp] 825 / 0 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.001G326000 [exp] 195 / 1e-54 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 191 / 8e-54 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.019G007100 [exp] 186 / 3e-53 AT4G08250 162 / 1e-44 GRAS family transcription factor (.1) Potri.012G020200 [exp] 184 / 8e-53 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.005G190300 [exp] 185 / 1e-52 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.015G008300 [exp] 184 / 1e-52 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.010G110700 [exp] 184 / 3e-51 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.006G114200 [exp] 181 / 4e-49 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008316 [exp] 597 / 0 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 555 / 0 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10041540 [exp] 211 / 2e-60 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 209 / 2e-59 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10016496 [exp] 190 / 9e-53 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10020857 [exp] 186 / 1e-52 AT4G08250 164 / 3e-45 GRAS family transcription factor (.1) Lus10040734 [exp] 186 / 1e-51 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10033583 [exp] 181 / 3e-50 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033517 [exp] 178 / 6e-50 AT4G08250 162 / 2e-44 GRAS family transcription factor (.1) Lus10017626 [exp] 179 / 2e-49 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.005G175300.1 pacid=42802555 polypeptide=Potri.005G175300.1.p locus=Potri.005G175300 ID=Potri.005G175300.1.v4.1 annot-version=v4.1 ATGGCCATGGCTATAGATGGAGCCAAATTTGAGCTCGACTTTTCCAGCTATAGCAGCACAACCACCACCACAACCCCCACCACTTCCACCGAAAATGACC ATGGCTGCAATTGGAATGATTGGTCACCCTTGGTCGACTGGGAGGCCTTATCAGGTGCCCAAGATGACTTTCAAGATCTCATCGATTCCATGATGGATGA TGGAGCGTTAATGAATCAAAGTATTCGCTTGACACCAGACACAAGCAACTCCATGTCCACAAGTGACACTATGCTTGTGGATGAAGAAACAAGCTGCAGC GACGATTTGAAGGGCTTGCGGCTAGTTCATCTATTGATGGCTGCGGCCGAGGCACTTACCGGTCTAAACAAGAACCGTGATCTGGCTCGGGTGATATTGG TTCGGCTCAAGGAGTTGGTTTCCCCAAATGATGGAACCAACATGGAAAGATTAGCTGCTTATTTCACTGACGCCTTGCAAGGCTTACTAGAAGGCAGTGG AAGTATTCACAGTAATAAACATCTTTCGGGAACCAACAATGGGCCTTACCATCATCACCATCGCGACGATCCTCAACATCATCATCATCAAAGTGATGTT CTTGCGGCCTTTCAGCTATTGCAAGACATGTCGCCTTATGTCAAGTTTGGGCATTTCACTGCCAATCAGGCTATTTTAGAAGCCGTAGCTGATGATAGAA GGATTCATATTGTGGACTACGATATCATGGAAGGGATCCAATGGGCTTCTCTGATGCAAGCTTTAGTTTCCAGGAAGGATGGCCCACCAACCCCACATCT TAGGATCACAGCTTTGTCAAGGGGTGGTAGTGGTAGGAGGTCTATTGGGACTGTCCAAGAAACGGGACGTCGTTTAGTGGCCTTTGCCGCATCAATTGGT CAACCCTTTTCTTTCCATCAGTGTAGGTTAGACTCTGATGATACATTTAGACCGTCTGCTTTGAAGCTGGTTCGTGGGGAGGCATTGGTTATGAATTGTA TGTTACAGCTCCCTCATTTTAGTTACCGGGCACCCGATTCGGTTGCTTCGTTTTTATCCGGAGCCAAGACATTGAACCCGAGGTTGATAGCCATGGTGGA AGAGGAGGTGGGCCCCATTGGAGATGGAGGGTTTGTGAGCCGGTTCATGGACTCATTGCACCACTACTCTGCCCTTTATGATTCTCTGGAGGCGGGTTTC CCGATGCAGGGTCGGGCTCGCGCTCTAGTTGAGAGAGTGTTTTTGGGGCCACGAATTGCTGGGTCATTGGCTCGGATCTATTCGGCGCGTGGAGAAGACG GTTGCTCGTGGGGAGAAAGGTTGGCTGCGGTGGGGTTTCAGCCAATCAAAATAAGCTTTGCCAATCATTGCCAGGCGAAGCTTTTACTGGGGCTTTTCAA TGATGGGTACAGGGTGGAGGAATTGGCTAGCAACAGGCTTGTCCTAGGTTGGAAATCTAGACGTTTACTATCCGCCTCTATTTGGACCTCTCCTTCTGAC CCTGATTTGTAA
AA sequence Show only first row Show all	>Potri.005G175300.1 pacid=42802555 polypeptide=Potri.005G175300.1.p locus=Potri.005G175300 ID=Potri.005G175300.1.v4.1 annot-version=v4.1 MAMAIDGAKFELDFSSYSSTTTTTTPTTSTENDHGCNWNDWSPLVDWEALSGAQDDFQDLIDSMMDDGALMNQSIRLTPDTSNSMSTSDTMLVDEETSCS DDLKGLRLVHLLMAAAEALTGLNKNRDLARVILVRLKELVSPNDGTNMERLAAYFTDALQGLLEGSGSIHSNKHLSGTNNGPYHHHHRDDPQHHHHQSDV LAAFQLLQDMSPYVKFGHFTANQAILEAVADDRRIHIVDYDIMEGIQWASLMQALVSRKDGPPTPHLRITALSRGGSGRRSIGTVQETGRRLVAFAASIG QPFSFHQCRLDSDDTFRPSALKLVRGEALVMNCMLQLPHFSYRAPDSVASFLSGAKTLNPRLIAMVEEEVGPIGDGGFVSRFMDSLHHYSALYDSLEAGF PMQGRARALVERVFLGPRIAGSLARIYSARGEDGCSWGERLAAVGFQPIKISFANHCQAKLLLGLFNDGYRVEELASNRLVLGWKSRRLLSASIWTSPSD PDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G175300 [exp]	0	1
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	1.00	0.9907
AT5G05340			Peroxidase superfamily protein...		Potri.006G107000 [exp]	1.73	0.9752	PRX1.13
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	2.82	0.9760
AT5G06490			RING/U-box superfamily protein...		Potri.010G243200 [exp]	3.87	0.9711
AT3G12830			SAUR-like auxin-responsive pro...		Potri.002G057500 [exp]	6.92	0.9631	SAUR13
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029200 [exp]	7.93	0.9682
AT4G08250	GRAS		GRAS family transcription fact...		Potri.002G086100 [exp]	8.24	0.9283
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134701 [exp]	8.36	0.9612
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	8.94	0.9732
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134300 [exp]	9.53	0.9625

Compare expression of checked genes

Potri.005G175300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.