Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77620 641 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G22010 56 / 2e-07 ATRFC1 replication factor C 1, replication factor C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084700 [exp] 1748 / 0 AT1G77620 634 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G213900 [exp] 58 / 4e-08 AT5G22010 1117 / 0.0 replication factor C 1, replication factor C1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035108 [exp] 752 / 0 AT1G77620 536 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013372 [exp] 52 / 4e-06 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Potri.005G177000.1 pacid=42802811 polypeptide=Potri.005G177000.1.p locus=Potri.005G177000 ID=Potri.005G177000.1.v4.1 annot-version=v4.1 ATGGACAGATCAGCCGATGGAGACGGACCAGTGGCGGTCGCAGCTGAAGAGATTCCGCAGCCGGAGCGGAGGAGTGTTCGCCGGAGACTTGTACAGTCCA CGTTGTTCCCTCATAAATCACCAGAAAATAGCGAACTAAAGCTCGATAAAAAATGTAACGGTGAGGATGACGATTATCAAGCCAAGGAGTATCGTGGGAG TCAAAATAAGAAGAAGAGAACGCGTAAGGGAAAGACAACTCCACAAACCAGAACTCCTAAAAAGTCGAAGCTGTTACCGCACAAATCACCGGAGACGGAA TCCAGTTGTGATCAGAAACGCCGTAAAGAATGTAATGCTGTCTGTGGGGATGGCGAAAGTGAAGGGGAAGAATACTGTGGGATTCAGAAGAAGGACACAC GGAAAGGAAAGGCAACTCCACAAAGTATAACTCCTAAAAAGTCAAGGGAGAAGTCACTTATGAATGGTACACCTAAAAAGAATGGCTCCAGTAATGGAAA AGGTATTGGTAATCTGATAGAGAACAAGGATGCATCACCACCAATCCCTAATTTGAGGTTAGAGGCCAAGATGACAGCCGAGGAAAATTCACGATTGTTA GCTGGGAAGCAAATACACCCCTTTTTCTCATCATGGAAAGTGAGTAAGAGATGTAACAAGACAACTGAATCAGAAAGTAACTATTGCCTGGCCAAGATAA AAGATAAAAACATCAATATTGGTCCTATTCACGTCTTTGAAAGGGATCAGGATGATGCAAGGCCTCTTGATTGGAGTGATTGGAAAGTTTGTGAGGAACC ATTTACCAATAGCAGTTGTAATCTAGAAGGCCCCGTCTCATCAAAATTTGAAGGCTTCATTGGATCGCTAGACATAAATGACTTCCCCTGTGCGTCACAT CCTCCCAGTACATCACTTCTTCAAGATAATGCATCTTTGGATCAATGCCTTTGTCGACAAGAATTTGTGTGCGAGGCACCAGCAATATTCTCTTCCACAT CATCTGATGTGCAGGACTGTAAGGTTGTTGAAGTTGGTTTCTTTTCTGGCTGTACAAGAAAATCAGATGCCAAGCAGCAAAGTGACCTTCTTCAAGAAAG GACTGACTCATCATACCTTAGTTGCACTAATCAACTTGAGGATAGACTGTGGATGGATAAGTACCAGCCAAAGAAGGCCACTGAGGTATGTGGAAATGAT GAATCAGTGAAAGTTTTGAGCGAGTGGCTTTGTTCTTGGAAACAAAGAGGTCATCAAGCCAGCACAGATACCTTCAGTGGTGATGTATGTGATAGACAAG ATGCTGATTATACCTGTTCTCAAAGTGACTCTGATTCAGAAAATAATAATGAAGGGGCCAGCCTTAAGAATGTTCTTTTGATTACTGGACCAACTGGGAG TGGGAAGTCTGCTGCTATCTATGCTTGTGCGAAGGAAGAGGGATTCAAAGTTCTGGAGGTCAATGCATCAGAGTGTCGAAATGGAGCTGTGGTGAAGCAA AGATTTGGAGAGGCATTAGAATCACATTCCCTTGAATGGTCACAGGAAATTCATGTGGAACCACAGAGCAACAAAATTGCAAAATTTCCCTCAGCCCTTC CTGATGGTAAATTGACACCAGATTCCGACAGCAAGATGATTGAGGTGATGCCAATATCGAATAAGGATAACTCTCTTGGAGCCACTGAGGCCACTACTAA TAAGTGTGCTTCCAAGGAGAGTACAATTGCCTGTGGTCGAGGACAACTTAAACACTTGATTCTTTTTGAAGATGTGGATATTACTTTTACCGAAGACCGT GGCTTTGTCTCTGCAATACAACAAATAGCTGAAAAAGCGAAAGGGCCTGTGATACTGACCAGCAATAGTGAAAATCCTGTTCTTCCTGCCAGTTTGGACA GGCTAGAAGTTTCTTTTATGATGCCATCTGAGAAGGAGCTTCTTCAGCACGCATATATGGTTTGTTCTGCTGAGAAGGTCAACATTCAATCTCATCTTCT AGAGCAAGTAGTTGAATATTGTCAAGGAGATATCAGAAAAACCATTTTGCATCTTCAGTTCTGGTTTCAGGGCAAACAAATTAGAAAACTGCTTCCAGGT AGAGAAGCACCAAGACTGTTTGGCCCGCTCAAGTTTGATCTTGAGGCTGGGCATCGAGTATTGCCAAAGATGATGCCATGGAATTTCCCTTCTTACTTAT CTGAGCTAGTTGAAAAGGAGATCACAAATTCATTGTCTATGATGGAAGAAGAAAATTCTGTTTCCATGGAGGTCATAGAAGAAGATTTTGAAGATAAAGA AATGCAGAATAACTCAAAGATTCATAATTATGGCAAATACAGTATAGAGGCCAAGAAAGAAGCAATGTTAAACCAGAACTGCTCTGATCATGATTGTGAT CACTTCGAAATCCCTTTTGATGCCATATATGATGTTTTTGATTCCTTAGGAACCCCGGTTTCATTCTCTCAGAGAAAAAGTAGAAGGAAGCTCAATGTAG TAATGTCTTCGGATTCTGAAGATGAGATTGTCAATGACAGAGTTCCCTTAATTGGAGACAGGGATACTAACAGTAAATTCACCCTTGAAGCTGATGGTGC ATTTCCCTCTCACTGTCCAAGCACGCAAAACTGCTTAAGTCCATCAACTGACCTTCAACTTTGTTCTGGATTGGAGAAACTAGATGAAAATTGTAGTCAA TGTCCAGATATAGCAGTTGATTTGCATGTAAAAGAGACATCCATATCAGTTGATGTATCATGTGTGCCTGAATCAACATTTGTTCCAGAAACTCAAATTA ATGGTGGAACAGAGGTGTCATTTAGCAGGGTGTATTGCACTTCAGTAGCTGACACTTTGGAAGAAGTTTCAGTGAGCAATGAGTTCAATCAAAACCTATG TCCAGTTGAAACTGAAAATCTTGACAAATTTGTGCCCATATTACAACATAATTCAGATATGTTGGGAAGCACTTGTGATGTAATCGCAGAATCATCTCAT GAAGAGGTGGAAGATTCTCAAAATGAACATGCTGAATCTATTACAAGAGAATATCAAGTATTGGATGAATGTAGCCGCATGGATTTCAATAAGAAACCCA AGCCAGCGGAGAAATTTCAATCCTGTATGATGACTGATTTAGTACGAGAGTCTTGGAGAAAACTTCGTGATCGTCATATAGATCTAAGACATTTTGTCAC CTCAGAAGTCAAAGATGCTACTGGGATAATAGAACTTGCTTATGGTATGAGCAATCTGATTTCAGAAGCTGAACTATTGCTTTCAAAGCACCAAACTTTG GATTCCTCTGATGTGTTGGATGCGTTCAGCTGGTCTGATGAGCATTTGCAGATGTCATCAACAATAGCTCGGCAAGGATTTTGCTTCTATGCCAAAGAAC TTGCTAATGCCGGGTTAAAAATGGGTTTGGAGTCCAAAGTAGATTTCACCTGGGAGATGCTGTCTACTGCTAGTATGATGGAATTTGGTAACTTGGTTAG ACGGAATTTGAGTAGTAAGAGCTCACATTCTGGGATGAGTACTGAGATGAGCCTACCAGAAAATGGAACATCGTCAAATAGTGAAATGAAGTCAAGCCTT CGTGATATAATCGAGTCCATAGTCCCTTCACGAGCATATATGACAATGAAAGGAGATGCATTCTATGAATATCAATCTTCGCTGTGCCACATTGCAAGAT CAGAAGCTTCTCGATTTTCAGCAAGCATTGTCAGGACTAAAGGACGGAGGGCACGAGCTTCTCGAAACTACTTGAGCAATGGTTCACTAATGCTGTCTCC GGAAGAAATTTCATTGCTGGGTCAGTCTAACATCTATTCAAAGATTCCGTCCCAATCAATGGACGCCACACATAGAACTATATAA
AA sequence Show only first row Show all	>Potri.005G177000.1 pacid=42802811 polypeptide=Potri.005G177000.1.p locus=Potri.005G177000 ID=Potri.005G177000.1.v4.1 annot-version=v4.1 MDRSADGDGPVAVAAEEIPQPERRSVRRRLVQSTLFPHKSPENSELKLDKKCNGEDDDYQAKEYRGSQNKKKRTRKGKTTPQTRTPKKSKLLPHKSPETE SSCDQKRRKECNAVCGDGESEGEEYCGIQKKDTRKGKATPQSITPKKSREKSLMNGTPKKNGSSNGKGIGNLIENKDASPPIPNLRLEAKMTAEENSRLL AGKQIHPFFSSWKVSKRCNKTTESESNYCLAKIKDKNINIGPIHVFERDQDDARPLDWSDWKVCEEPFTNSSCNLEGPVSSKFEGFIGSLDINDFPCASH PPSTSLLQDNASLDQCLCRQEFVCEAPAIFSSTSSDVQDCKVVEVGFFSGCTRKSDAKQQSDLLQERTDSSYLSCTNQLEDRLWMDKYQPKKATEVCGND ESVKVLSEWLCSWKQRGHQASTDTFSGDVCDRQDADYTCSQSDSDSENNNEGASLKNVLLITGPTGSGKSAAIYACAKEEGFKVLEVNASECRNGAVVKQ RFGEALESHSLEWSQEIHVEPQSNKIAKFPSALPDGKLTPDSDSKMIEVMPISNKDNSLGATEATTNKCASKESTIACGRGQLKHLILFEDVDITFTEDR GFVSAIQQIAEKAKGPVILTSNSENPVLPASLDRLEVSFMMPSEKELLQHAYMVCSAEKVNIQSHLLEQVVEYCQGDIRKTILHLQFWFQGKQIRKLLPG REAPRLFGPLKFDLEAGHRVLPKMMPWNFPSYLSELVEKEITNSLSMMEEENSVSMEVIEEDFEDKEMQNNSKIHNYGKYSIEAKKEAMLNQNCSDHDCD HFEIPFDAIYDVFDSLGTPVSFSQRKSRRKLNVVMSSDSEDEIVNDRVPLIGDRDTNSKFTLEADGAFPSHCPSTQNCLSPSTDLQLCSGLEKLDENCSQ CPDIAVDLHVKETSISVDVSCVPESTFVPETQINGGTEVSFSRVYCTSVADTLEEVSVSNEFNQNLCPVETENLDKFVPILQHNSDMLGSTCDVIAESSH EEVEDSQNEHAESITREYQVLDECSRMDFNKKPKPAEKFQSCMMTDLVRESWRKLRDRHIDLRHFVTSEVKDATGIIELAYGMSNLISEAELLLSKHQTL DSSDVLDAFSWSDEHLQMSSTIARQGFCFYAKELANAGLKMGLESKVDFTWEMLSTASMMEFGNLVRRNLSSKSSHSGMSTEMSLPENGTSSNSEMKSSL RDIIESIVPSRAYMTMKGDAFYEYQSSLCHIARSEASRFSASIVRTKGRRARASRNYLSNGSLMLSPEEISLLGQSNIYSKIPSQSMDATHRTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77620			P-loop containing nucleoside t...		Potri.005G177000 [exp]	0	1
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	5.09	0.8498
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Potri.008G046600 [exp]	5.47	0.7967
AT2G35035		URED	urease accessory protein D (.1...		Potri.001G159600 [exp]	5.65	0.8230
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Potri.014G072800 [exp]	9.79	0.8388
AT5G18610			Protein kinase superfamily pro...		Potri.008G046500 [exp]	14.49	0.7935	Pt-PNPK2.2
AT5G07590			Transducin/WD40 repeat-like su...		Potri.001G079100 [exp]	20.78	0.7940
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.004G035300 [exp]	26.07	0.7778
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.007G000300 [exp]	26.83	0.7848
AT3G18360			VQ motif-containing protein (....		Potri.012G055900 [exp]	27.00	0.8070
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Potri.012G065000 [exp]	30.65	0.7567

Compare expression of checked genes

Potri.005G177000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.