Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 746 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 718 / 0 AAP2 amino acid permease 2 (.1) AT5G63850 710 / 0 AAP4 amino acid permease 4 (.1) AT1G44100 692 / 0 AAP5 amino acid permease 5 (.1) AT1G58360 569 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 563 / 0 AAP6 amino acid permease 6 (.1) AT1G10010 550 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 437 / 2e-150 AAP7 amino acid permease 7 (.1.2) AT5G40780 160 / 8e-44 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 157 / 1e-42 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079400 [exp] 885 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 867 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 845 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 835 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.005G181500 [exp] 802 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.005G068900 [exp] 760 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 759 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 694 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 587 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029707 [exp] 759 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 728 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 724 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 711 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 687 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 682 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 678 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042744 [exp] 662 / 0 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 572 / 0 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 553 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.005G181600.1 pacid=42803464 polypeptide=Potri.005G181600.1.p locus=Potri.005G181600 ID=Potri.005G181600.1.v4.1 annot-version=v4.1 ATGAAGATGGGTGAGAATACAGCCACAAAGAACCATCTCCCACCCCAGGCTTTCGGTGTCTCGGTTGACGCAGATCCACAAAGTGACTCCAAGTGGTTTG ATGATGATGGGCGTCCCAAACGAACTGGAAATGTGTGGACTGCTAGTGCTCACATCATAACAGCTGTTATTGGGTCCGGGGTTCTATCCTTGGCTTGGGC TATAGGTCAGCTTGGATGGATTGCTGGACCAGCTGTGATGCTTTTGTTCTCTTTTGTCACTTACTATACTTCCATTCTGCTCTCTGCCTGCTACCGCTCC GGTGATCCTGACAATGGCAAGAGGAACTACACTTACATGGAAGCTGTTAGGGCCAACCTTGGTGGTGTAAAGGTCAAAATATGTGGATTTGTTCAGTATG TGAACCTTTTCGGGGTTGCCATTGGCTACACAATTGCATCTTCTATAAGCATGATGGCAATAAAGAGGTCTAATTGTTTCCACCAGAGTGGTGGAAAAGA TCCATGCCGCATGAATGCCAATCCATATATGATAGGGTTTGGCATAGCTGAGATCCTTCTGTCTCAGATTCCTGGATTTGATCAGTTACACTGGCTCTCC CTTGTCGCTGCAGTCATGTCCTTCACTTATTCAACAATTGGTCTAGGTCTTGGCATTGGTAAAGTTATAGAAAATAAAAGAGTCAGGGGAAGCCTAACCG GAATAAGTGTTGGCACTGTGACTCAAACTCAAAAGATATGGAGAAGCTTCCAAGCACTTGGTGACGTTGCTTTTGCCTATTCTTACTCCGTGATCCTCAT TGAAATTCAGGACACGGTCAAAGCCCCACCTTCGGAAGCCAAGACAATGAAGAAAGCAACTCTAATAAGTGTTGTAGTGACAACGCTTTTCTACATGTTC TGTGGCTGCTTTGGATATGCTGCTTTTGGAGACCAGTCCCCTGGCAACCTCCTCACTGGATTTGGCTTCTACAATCCATATTGGCTACTTGACATTGCCA ATACTGCCATTGTAATCCACCTTGTAGGTGCATACCAAGTTTACTGCCAACCCCTCTTTGCCTTTATTGAAAAAGAAGCGGCCCGAAGATTCCCAGATAG TGATTTCGTTACCAAAGATATCAAAATCTCAATTCCTGGTCTCAGTGCATTCAATATCAACCTCTTCAGAATGGTTTCGAGAACAATTTTTGTGGTTCTT ACTACTGTGATTTCAATGCTCCTTCCCTTCTTTAATGACATAGTTGGTCTCCTTGGGGCGTTTGGATTTTGGCCATTGACCGTTTACTTCCCAGTTGAGA TGTATATTTCACAAAAGAAGATACCAAAATGGAGCACGAGATGGCTTTGCCTCCAAATCCTTAGTGTTGCTTGCCTCATTATTACTATAGCTGCTGCCGC TGGCTCTATTGCTGGAGTTATTGATGATGTCAAGACTATTAAGCCCTTCAAGACCAGTTACTAG
AA sequence Show only first row Show all	>Potri.005G181600.1 pacid=42803464 polypeptide=Potri.005G181600.1.p locus=Potri.005G181600 ID=Potri.005G181600.1.v4.1 annot-version=v4.1 MKMGENTATKNHLPPQAFGVSVDADPQSDSKWFDDDGRPKRTGNVWTASAHIITAVIGSGVLSLAWAIGQLGWIAGPAVMLLFSFVTYYTSILLSACYRS GDPDNGKRNYTYMEAVRANLGGVKVKICGFVQYVNLFGVAIGYTIASSISMMAIKRSNCFHQSGGKDPCRMNANPYMIGFGIAEILLSQIPGFDQLHWLS LVAAVMSFTYSTIGLGLGIGKVIENKRVRGSLTGISVGTVTQTQKIWRSFQALGDVAFAYSYSVILIEIQDTVKAPPSEAKTMKKATLISVVVTTLFYMF CGCFGYAAFGDQSPGNLLTGFGFYNPYWLLDIANTAIVIHLVGAYQVYCQPLFAFIEKEAARRFPDSDFVTKDIKISIPGLSAFNINLFRMVSRTIFVVL TTVISMLLPFFNDIVGLLGAFGFWPLTVYFPVEMYISQKKIPKWSTRWLCLQILSVACLIITIAAAAGSIAGVIDDVKTIKPFKTSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.005G181600 [exp]	0	1
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	1.73	0.9418
AT3G57810			Cysteine proteinases superfami...		Potri.008G026100 [exp]	3.00	0.9219
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.014G118400 [exp]	3.46	0.9195
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	5.09	0.9356
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	6.00	0.9151
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	9.16	0.9128
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	9.48	0.9158
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.010G191600 [exp]	10.95	0.8811
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056366 [exp]	12.96	0.9021
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056200 [exp]	13.26	0.9025

Compare expression of checked genes

Potri.005G181600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.