Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SCL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21450 685 / 0 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 443 / 8e-151 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 405 / 2e-137 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 410 / 8e-137 GRAS SCL5 scarecrow-like 5 (.1) AT4G17230 382 / 2e-126 GRAS SCL13 SCARECROW-like 13 (.1) AT5G52510 251 / 7e-75 GRAS SCL8 SCARECROW-like 8 (.1) AT3G03450 237 / 1e-70 GRAS RGL2 RGA-like 2 (.1) AT1G66350 226 / 6e-67 GRAS RGL1 RGA-like 1 (.1) AT1G07530 229 / 4e-66 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT5G17490 221 / 9e-65 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G073400 [exp] 1043 / 0 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 450 / 8e-153 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 427 / 3e-144 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.011G131100 [exp] 412 / 7e-138 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.001G409500 [exp] 412 / 2e-137 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.016G009700 [exp] 394 / 4e-131 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 387 / 4e-128 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.017G142400 [exp] 286 / 6e-88 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1) Potri.004G078800 [exp] 264 / 1e-79 AT5G52510 482 / 1e-162 SCARECROW-like 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029747 [exp] 796 / 0 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10042776 [exp] 792 / 0 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10012323 [exp] 440 / 4e-149 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 427 / 6e-144 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 424 / 3e-143 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 401 / 2e-133 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 389 / 3e-129 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 387 / 2e-128 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 382 / 3e-126 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10003772 [exp] 315 / 3e-104 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.005G186500.6 pacid=42802433 polypeptide=Potri.005G186500.6.p locus=Potri.005G186500 ID=Potri.005G186500.6.v4.1 annot-version=v4.1 ATGTCTTTAGTTGGATCCGCAGAACTCTCTGCCAGAGCATACGGAAATAATAAGCTGTACTCACTGAAGGGGAGCAATGACAACTCTGGTTTGTCTGCCA AAATATTCGGGCCTGATAAACGGCAGAACATGTATATGACCGATTCTTACTCTTGTGAGAGTTATGAGAAGTTCTTCCTTGATTCCCCAACAGAAGAAAT AATACAACCATCAAGTTCTGACATTTCAGGGAACTCAGCTCATCCACAAGGGGCATCTTCCTACCAGCCAAGAAAGAGTTCAGGTTCAACCATGTTCCCT CAAGATCCCTATGATGCTTCTTTCAATTTGACCACACCCTGCGATGGCTATCCATTCATTTCCGAGTCAGATTACTTGGACATTGAGAGCCCATATCAAC TAGATTATGATGAATATAAGATGAAGTTAAAGCTTCAGGAACTAGAGAGAGCACTTCTAGAGGACAATGAAGAGGATGGCATGTTTGGAAATAGTCAAAG CATGGAAATGGATGTAGAGTGGTCTGATCCAATCCAGAATGGGATGCTCCATGATTCTCCCAAGGAGTCATCATCTTCAGATTCTAACCTAAGTAGCTTC AGCAGTAATAAAGAAGTATCACAGTTATCACCTCGGACTCCCAGGCGACTGCTTTTTGAATGTGCTAATGCAATCTCGGAGGGAAACATTGAGAAAGCAT CGGCATTAATAAATGAGCTCCGTCAATTGGTCTCGATTCAAGGAGATCCTCCCCAGAGGATTGCAGCCTACATGGTGGAAGGACTTGCAGCTCATATGGC TGAATCTGGAATATATCTCTATAAAGCTCTGAAATGCAAGGAGCCTCCTTCTGATGATAGGCTTGCAGCTATGCAGATCCTTTTTGAGATTTGCCCTTGT TTTAAATTTGGATTTATGGCAGCAAATGGTGCAATGATCGAAGCATTTAAAGGTGAAAGGAGAGTTCATATAATAGATTTTGACATAAACCAAGGGAGTC AATACATAACACTGATACAAACACTCGCCAACCAGCCAGGTAAGCTGCCAAACTTGAGGTTAACCGGGGTTGATGACCCCGAGTCAGTTCAACGACCTGT TGGTGGCCTGAGGAACATTGGGCGAAGGCTTGAAAAGCTAGCAGAAGCACTTAAGGTCCCATTTGAGTTTCATGCGGTGGCCTCCAAGACTTCAGTTGTC AGTCCATCCATGCTGAACTGCAAGCCTGGGGAAGCACTTGTAGTGAATTTTGCTTTCCAACTCCATCACATGCCTGATGAGAGTGTTTCAACAGTAAATG AGCGAGACCAGCTTCTTCGGATGGCTAAGAGCTTGAATCCAAAACTGGTAACTGTTGTCGAGCAAGATGTGAATACTAATACTGCCCCCTTTTTCCCGAG ATTTACTGAAGCTTACAACTATTACTCTGCCGTGTTCGATTCTCTTGATGCAACTCTCCCTCGAGAAAGCCAGGACAGGCTGAATGTTGAGAAACAGTGT CTGGCACGGGACATAGTAAACATTGTAGCATGTGAGGGAGAGGAAAGGATTGAGAGGTATGAGGTTGCTGGGAAATGGAGGGCAAGGATGAAGATGGCAG GCTTCACTTCGTGTTCAATCAGTCCTAGCGTGGTTGATTTGATTCGTAAACTCATAAAGCAGTATAGCGATAGATACATGTTGAAGGAGGAAGTGGGTGC ACTTCATTTTGGGTGGGAAGACAAAAGTTTGGTTTTTGCTTCAGCATGGAAGTAA
AA sequence Show only first row Show all	>Potri.005G186500.6 pacid=42802433 polypeptide=Potri.005G186500.6.p locus=Potri.005G186500 ID=Potri.005G186500.6.v4.1 annot-version=v4.1 MSLVGSAELSARAYGNNKLYSLKGSNDNSGLSAKIFGPDKRQNMYMTDSYSCESYEKFFLDSPTEEIIQPSSSDISGNSAHPQGASSYQPRKSSGSTMFP QDPYDASFNLTTPCDGYPFISESDYLDIESPYQLDYDEYKMKLKLQELERALLEDNEEDGMFGNSQSMEMDVEWSDPIQNGMLHDSPKESSSSDSNLSSF SSNKEVSQLSPRTPRRLLFECANAISEGNIEKASALINELRQLVSIQGDPPQRIAAYMVEGLAAHMAESGIYLYKALKCKEPPSDDRLAAMQILFEICPC FKFGFMAANGAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANQPGKLPNLRLTGVDDPESVQRPVGGLRNIGRRLEKLAEALKVPFEFHAVASKTSVV SPSMLNCKPGEALVVNFAFQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEAYNYYSAVFDSLDATLPRESQDRLNVEKQC LARDIVNIVACEGEERIERYEVAGKWRARMKMAGFTSCSISPSVVDLIRKLIKQYSDRYMLKEEVGALHFGWEDKSLVFASAWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.005G186500 [exp]	0	1	Pt-SCL1.1
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Potri.018G038100 [exp]	1.00	0.8624
AT5G05140			Transcription elongation facto...		Potri.006G035500 [exp]	2.82	0.8325
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Potri.012G078900 [exp]	7.93	0.7904
AT1G26580			unknown protein		Potri.004G118400 [exp]	11.66	0.7704
AT5G59790			Domain of unknown function (DU...		Potri.001G235700 [exp]	13.41	0.8094
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128900 [exp]	14.07	0.7369
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138900 [exp]	18.89	0.8263	DREB38
AT1G22930			T-complex protein 11 (.1.2)		Potri.004G217800 [exp]	20.66	0.7405
AT5G17680			disease resistance protein (TI...		Potri.013G097300 [exp]	21.90	0.7416
AT1G61215		BRD4	bromodomain 4 (.1)		Potri.004G036900 [exp]	23.91	0.7605

Compare expression of checked genes

Potri.005G186500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.