Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GRAS43
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 139 / 6e-36 GRAS GRAS family transcription factor (.1) AT5G41920 136 / 2e-35 GRAS GRAS family transcription factor (.1) AT5G17490 134 / 4e-34 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 133 / 9e-34 GRAS RGL2 RGA-like 2 (.1) AT1G55580 128 / 2e-32 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT3G54220 125 / 8e-31 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G66350 122 / 6e-30 GRAS RGL1 RGA-like 1 (.1) AT5G66770 118 / 2e-28 GRAS GRAS family transcription factor (.1) AT3G50650 113 / 7e-27 GRAS SCL7 GRAS family transcription factor (.1) AT2G01570 105 / 5e-24 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G007100 [exp] 350 / 1e-116 AT4G08250 162 / 1e-44 GRAS family transcription factor (.1) Potri.002G086100 [exp] 190 / 1e-54 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.005G175300 [exp] 190 / 1e-54 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.001G473200 [exp] 130 / 2e-33 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.012G020200 [exp] 129 / 1e-32 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.016G143833 [exp] 124 / 2e-30 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.015G008300 [exp] 121 / 4e-30 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G326000 [exp] 122 / 1e-29 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.006G114200 [exp] 122 / 2e-29 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020857 [exp] 288 / 2e-92 AT4G08250 164 / 3e-45 GRAS family transcription factor (.1) Lus10033517 [exp] 287 / 5e-92 AT4G08250 162 / 2e-44 GRAS family transcription factor (.1) Lus10008316 [exp] 182 / 2e-51 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 167 / 6e-47 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10024014 [exp] 120 / 3e-29 AT5G66770 590 / 0.0 GRAS family transcription factor (.1) Lus10032882 [exp] 119 / 3e-29 AT1G55580 294 / 2e-95 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10027123 [exp] 118 / 6e-29 AT1G55580 298 / 5e-97 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10016496 [exp] 120 / 8e-29 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 119 / 1e-28 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10041540 [exp] 118 / 4e-28 AT1G66350 317 / 2e-100 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.005G190300.1 pacid=42805299 polypeptide=Potri.005G190300.1.p locus=Potri.005G190300 ID=Potri.005G190300.1.v4.1 annot-version=v4.1 ATGAACTGTGAGCAAGCTCCTCTTATCTACTACAATACTGAACTGCAATGCAACCTCGAAATTGCTTCAGCTTTCCCAACAGAAAAGGACAACCTGGACA CCGATCAGTTTATCGAAAGCTTACTTCAAATGGAAGCTGATGGCATGGATGAAGCCGGTATTAATAACAGATGTGGCAGCCACACATCAACTAGTTCTGT GAATCAAGAAAGTGGCAGCTTGGTTACTTCCATAGATGAAACTGTGCATTTTGTCGGCTTTCAGGAGAGTAATGGTAGCAATACCTTCACTGATTTTCTG TTGACAGGAGCCCAGGCTGTTGAAGTATCAAACTGGCATCTTGCTTCAAATATAATCGCAGGAATCAGCGAATTACTTCTAAGCCAAACTGACGAGAATC TGTTCAGTGATATGGTTTTTTATTTCACTCAAGGGCTCTCCTACAAATGCAGAGATACTCCAGCATTAGCATTACATGAGATTGTTCATGCACAGAATGA AACCATGTCTCACTTCCAGATGCTCAAAGAGCTCTCCCCATATGTGAGGTTTGCACAATTCACTGCAAACCAAGCGATCCTTGAGGCAACCAGAGAGGAA AATGAGGTTCATATCCTGGATCTTGACATCATGGATGGAATTCAATGGCCACCACTAATGGCAGATCTTGCACAGAGGAATAATGTTTCTCTGAGAATAA CTGCAATTGTTGGCGACCCAGAGAAAGCAGCTCTTGTACAACATACGGGCAGAAGACTGGTCGAGTTTGCAGAATCAGTAGGTCAAACGTTCAAGTTTGA CCAAATGACTATCGAGAAAGAAGAGGACTTTGAAAAAATTGAAGGGGGCCATACACTGATAGCAAACTGCATGATCCATCAGCTTCACATGACTGACAGG AACCTTTTGGTTGTGAAGAATTTCTTGAGTGGCGTGAGTAGACTATCCCCAAAACTGGTGGTTTTGGTTGAAGAAGAACTCTTAAATTTTCTTAAGGTTT CATCTGTGTCCTTTGTAGAGTTTTTTCGCGAGGCGATCCAACATTACACTGCACTTTCTGATTCTCTACAATATAGCTACGGAAGAGTGGGGTTTGAACT ATTTCAAAAGGAGACCATGGGGCTTAGGATTATGGATAGTGTAAGGAGTTTTCCGATTGGGAGAGAAGAGAAAATGTCGTGGGAGGAAAGCTTTTCTTTG CTGAAGAATTTCAAACCAATCCCCATGAGTGCCACCAATGTTTCTCAAGCCAAGCAATTGTCAGGTCTCCTTGGTATAGGGTACTGGGTGCAAAATGAAA ATTCAAGGTTGTCTTTGTGTTGGAAATCAAGGCCTCTAACAACTGCTTCCTCTTGGATTCCTAGACATGCTCTAGGAAGTCGGCATTGA
AA sequence Show only first row Show all	>Potri.005G190300.1 pacid=42805299 polypeptide=Potri.005G190300.1.p locus=Potri.005G190300 ID=Potri.005G190300.1.v4.1 annot-version=v4.1 MNCEQAPLIYYNTELQCNLEIASAFPTEKDNLDTDQFIESLLQMEADGMDEAGINNRCGSHTSTSSVNQESGSLVTSIDETVHFVGFQESNGSNTFTDFL LTGAQAVEVSNWHLASNIIAGISELLLSQTDENLFSDMVFYFTQGLSYKCRDTPALALHEIVHAQNETMSHFQMLKELSPYVRFAQFTANQAILEATREE NEVHILDLDIMDGIQWPPLMADLAQRNNVSLRITAIVGDPEKAALVQHTGRRLVEFAESVGQTFKFDQMTIEKEEDFEKIEGGHTLIANCMIHQLHMTDR NLLVVKNFLSGVSRLSPKLVVLVEEELLNFLKVSSVSFVEFFREAIQHYTALSDSLQYSYGRVGFELFQKETMGLRIMDSVRSFPIGREEKMSWEESFSL LKNFKPIPMSATNVSQAKQLSGLLGIGYWVQNENSRLSLCWKSRPLTTASSWIPRHALGSRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G190300 [exp]	0	1	GRAS43
AT3G07600			Heavy metal transport/detoxifi...		Potri.009G048400 [exp]	2.82	0.9796
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Potri.011G131001 [exp]	5.19	0.9789
AT2G26110			Protein of unknown function (D...		Potri.001G008080 [exp]	6.63	0.9683
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016900 [exp]	7.07	0.9508
AT1G43040			SAUR-like auxin-responsive pro...		Potri.002G000600 [exp]	7.21	0.9771
					Potri.008G082000 [exp]	7.87	0.9366
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.008G166700 [exp]	8.48	0.9755
AT3G10080			RmlC-like cupins superfamily p...		Potri.010G238100 [exp]	9.21	0.9598
AT1G53903			Protein of unknown function (D...		Potri.001G163400 [exp]	9.94	0.9732
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.014G038700 [exp]	10.39	0.9503

Compare expression of checked genes

Potri.005G190300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.