Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76860 176 / 4e-59 Small nuclear ribonucleoprotein family protein (.1) AT1G21190 174 / 3e-58 Small nuclear ribonucleoprotein family protein (.1) AT3G62840 54 / 6e-11 Small nuclear ribonucleoprotein family protein (.1.2) AT2G47640 54 / 6e-11 Small nuclear ribonucleoprotein family protein (.1.2.3.4) AT5G44500 50 / 2e-08 Small nuclear ribonucleoprotein family protein (.1.2) AT4G20440 46 / 4e-07 SMB small nuclear ribonucleoprotein associated protein B (.1.2.3.4) AT2G03870 43 / 2e-06 EMB2816 EMBRYO DEFECTIVE 2816, Small nuclear ribonucleoprotein family protein (.1.2) AT5G48870 40 / 2e-05 SAD1 SUPERSENSITIVE TO ABA AND DROUGHT 1, Small nuclear ribonucleoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068800 [exp] 190 / 1e-64 AT1G76860 175 / 1e-58 Small nuclear ribonucleoprotein family protein (.1) Potri.002G204300 [exp] 52 / 8e-10 AT3G62840 204 / 6e-70 Small nuclear ribonucleoprotein family protein (.1.2) Potri.014G129100 [exp] 52 / 8e-10 AT3G62840 204 / 6e-70 Small nuclear ribonucleoprotein family protein (.1.2) Potri.011G155700 [exp] 47 / 4e-07 AT4G20440 218 / 2e-70 small nuclear ribonucleoprotein associated protein B (.1.2.3.4) Potri.001G440100 [exp] 46 / 4e-07 AT4G20440 211 / 2e-67 small nuclear ribonucleoprotein associated protein B (.1.2.3.4) Potri.001G269500 [exp] 42 / 5e-06 AT2G03870 183 / 8e-62 EMBRYO DEFECTIVE 2816, Small nuclear ribonucleoprotein family protein (.1.2) Potri.009G064000 [exp] 42 / 5e-06 AT2G03870 183 / 8e-62 EMBRYO DEFECTIVE 2816, Small nuclear ribonucleoprotein family protein (.1.2) Potri.001G277900 [exp] 41 / 9e-06 AT5G48870 162 / 5e-54 SUPERSENSITIVE TO ABA AND DROUGHT 1, Small nuclear ribonucleoprotein family protein (.1) Potri.009G072500 [exp] 41 / 9e-06 AT5G48870 162 / 5e-54 SUPERSENSITIVE TO ABA AND DROUGHT 1, Small nuclear ribonucleoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040487 [exp] 184 / 4e-62 AT1G76860 175 / 8e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10011293 [exp] 184 / 4e-62 AT1G76860 175 / 8e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10026326 [exp] 182 / 1e-61 AT1G76860 176 / 4e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10042341 [exp] 136 / 6e-43 AT1G76860 132 / 2e-41 Small nuclear ribonucleoprotein family protein (.1) Lus10030367 [exp] 52 / 7e-10 AT2G47640 185 / 2e-62 Small nuclear ribonucleoprotein family protein (.1.2.3.4) Lus10007876 [exp] 52 / 7e-10 AT2G47640 185 / 2e-62 Small nuclear ribonucleoprotein family protein (.1.2.3.4) Lus10013840 [exp] 51 / 1e-09 AT2G47640 184 / 3e-62 Small nuclear ribonucleoprotein family protein (.1.2.3.4) Lus10026556 [exp] 51 / 1e-09 AT2G47640 184 / 3e-62 Small nuclear ribonucleoprotein family protein (.1.2.3.4) Lus10023386 [exp] 46 / 4e-07 AT5G44500 259 / 5e-87 Small nuclear ribonucleoprotein family protein (.1.2) Lus10038421 [exp] 46 / 4e-07 AT5G44500 263 / 2e-88 Small nuclear ribonucleoprotein family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0527 [poplar] [flax] Sm-like PF01423 [poplar] [flax] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Potri.005G191600.2 pacid=42805463 polypeptide=Potri.005G191600.2.p locus=Potri.005G191600 ID=Potri.005G191600.2.v4.1 annot-version=v4.1 ATGGCAAGCGAAGAAGAGAGTGCGGTAAAAGAACCATTGGATCTCATCAGACTTAGCCTGGACGAGCGTATCTACGTCAAGCTCCGCTCTGATCGTGAGC TTCGCGGCAAACTTCACGCTTATGATCAGCATTTGAATATGATTCTTGGGGATGTTGAAGAAATTGTTACTACAGTAGAAATCGATGATGAAACCTATGA AGAGATTGTTCGGACTACAAGGCGCACAGTACCCTTCCTGTTTGTTAGAGGAGATGGTGTCATATTGGTCTCTCCTCCATTGAGGACAGCTTAA
AA sequence Show only first row Show all	>Potri.005G191600.2 pacid=42805463 polypeptide=Potri.005G191600.2.p locus=Potri.005G191600 ID=Potri.005G191600.2.v4.1 annot-version=v4.1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76860			Small nuclear ribonucleoprotei...		Potri.005G191600 [exp]	0	1
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	1.00	0.8741	RAB11.4
AT4G21105			cytochrome-c oxidases;electron...		Potri.001G460200 [exp]	2.00	0.8427
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Potri.013G153700 [exp]	4.00	0.7820
AT5G64130			cAMP-regulated phosphoprotein ...		Potri.004G111900 [exp]	4.47	0.7670
AT5G01470			S-adenosyl-L-methionine-depend...		Potri.006G100100 [exp]	5.47	0.7846
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.010G199000 [exp]	5.47	0.7872
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.010G084800 [exp]	6.00	0.8039	PBD2.2
AT4G24820			26S proteasome, regulatory sub...		Potri.012G093500 [exp]	7.48	0.7839
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Potri.013G082900 [exp]	8.06	0.7520
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Potri.005G092600 [exp]	8.83	0.8154

Compare expression of checked genes

Potri.005G191600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.