Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50080 108 / 2e-27 AP2_ERF ERF110 ethylene response factor 110 (.1) AT1G43160 100 / 1e-24 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT2G33710 99 / 1e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G07310 99 / 3e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61890 97 / 1e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G13330 93 / 1e-21 AP2_ERF RAP2.6L related to AP2 6l (.1) AT2G47520 88 / 3e-20 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G53910 84 / 1e-17 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) AT3G16770 82 / 2e-17 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT5G64750 83 / 4e-17 AP2_ERF ABR1 ABA REPRESSOR1, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065600 [exp] 434 / 8e-150 AT5G50080 88 / 6e-20 ethylene response factor 110 (.1) Potri.005G087200 [exp] 105 / 4e-25 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.007G076800 [exp] 103 / 1e-24 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.001G067600 [exp] 96 / 2e-22 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 95 / 3e-22 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.012G108500 [exp] 91 / 8e-21 AT5G61890 144 / 3e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.001G163700 [exp] 90 / 2e-19 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.009G101900 [exp] 87 / 5e-19 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.010G006800 [exp] 86 / 1e-18 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028679 [exp] 146 / 1e-39 AT5G61890 130 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Lus10006796 [exp] 98 / 2e-22 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10005805 [exp] 98 / 3e-22 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10022426 [exp] 94 / 4e-21 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10037448 [exp] 91 / 8e-20 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10014054 [exp] 86 / 9e-19 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10003601 [exp] 84 / 5e-18 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008214 [exp] 84 / 8e-18 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10016827 [exp] 82 / 3e-17 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10013186 [exp] 81 / 2e-16 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.005G195000.1 pacid=42803923 polypeptide=Potri.005G195000.1.p locus=Potri.005G195000 ID=Potri.005G195000.1.v4.1 annot-version=v4.1 ATGTGCGTATTGAAGGTGGCGAACCCAAGAGGCAACTCAGGGGAGTACAGCAGGTACCCTTACACAGATAGCGATGATAACCAAGAAGAGAGATCGTACA CAGCACAACAAATATTTTCTGAATTGAATCAACCAATACAGCGGCATGTGGAGGTAACTCAATCACCACATATGTTCATGGGGTATAGCAGTTCAGCAGA GATGTCTGCAATGGTATCAGCACTTACACATGTGGTCTCAGGCCACAGAGGAAGTACTAGCGATTGGGGATCATATGGGGCCTCAGGTCTAGGAGGGGCA ACAATAACGTCGACTTTTGTTCAGGCAGCACCTGGTTCTAACACTTCTCCCGCTTCTCCATCTTTGTCTGCATATTCTTCTACTTCTGGTTCTGGTTCCT GGATTGGCCAGAAGAGAGGGAGAGAAAAGGAAGCCGGTGCAGCAGCTCAATTGAAGGAGTCTTTGCCAAGGGTTCATAGAGGGTTTGATGATTTTAGAAG TTCACTGGGCGATTCGTCGTCATCTGGTGCAACTGCAACTGAAGAAGTGTCTGCTTCAACTCTAGTATTCTCCACCACAGCAACACCCTCCACCACAGCA ACACCATCAAGTGAAACAGCATCTTTGGGAGAAACAGGAGAGCGAAAAAGAAGATACAGAGGAGTTAGGCAAAGGCCATGGGGCAAATGGGCAGCAGAGA TACGTGATCCACACAAAGCAGCAAGAGTCTGGCTAGGCACATTTGAAACTGCAGAAGCTGCAGCTAGAGCCTATGATGAGGCTGCTTTAAGATTCAGAGG AAGTAGAGCTAAACTTAACTTCCCTGAAAATGCTAGGCTACTGCCAGCTCAAATGCAAAATGTTACTGCTTCTCAAGTTCCCATTTCTCGTTCACAATTA CCTTCTCATCACCAGTTACAGTCAATCTCATCTCCAAGGCAACAAGCACAGCGGCCGCAGGTGCCAGCACCTGCATTGTTTCAGTCTCAACCTGATATTA TAAGAGACTACTGGGAGTACTCCCAGTTGTTGCAGAGTTCTGGGGACTTTCATGGACAACAACAACCACCACCTTCAAATTTGTTAGAGCAGATGTTTTA TAATCCCCAGCTGGCCTCTCTACAATCATCAACTTTGTCTTCATTACCTTCATCTACTTCAGGTTCTTCATTTGCAGCAATACCATCTGGTTCGATATCA TCAACACTATCTCCATCTGCTTCTTCATTTCCTCTGCTTTTTGCTGGTCAACAGTTAGGTTATTTTCGGCCACCAGAAAATCAGAATCCAGCTGCTGGTT CCGATTTTCCGGTGCCCCCATGGACAGATTGTAGTCGCCGTCCTTCCTCCACTGGTTAA
AA sequence Show only first row Show all	>Potri.005G195000.1 pacid=42803923 polypeptide=Potri.005G195000.1.p locus=Potri.005G195000 ID=Potri.005G195000.1.v4.1 annot-version=v4.1 MCVLKVANPRGNSGEYSRYPYTDSDDNQEERSYTAQQIFSELNQPIQRHVEVTQSPHMFMGYSSSAEMSAMVSALTHVVSGHRGSTSDWGSYGASGLGGA TITSTFVQAAPGSNTSPASPSLSAYSSTSGSGSWIGQKRGREKEAGAAAQLKESLPRVHRGFDDFRSSLGDSSSSGATATEEVSASTLVFSTTATPSTTA TPSSETASLGETGERKRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENARLLPAQMQNVTASQVPISRSQL PSHHQLQSISSPRQQAQRPQVPAPALFQSQPDIIRDYWEYSQLLQSSGDFHGQQQPPPSNLLEQMFYNPQLASLQSSTLSSLPSSTSGSSFAAIPSGSIS STLSPSASSFPLLFAGQQLGYFRPPENQNPAAGSDFPVPPWTDCSRRPSSTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50080	AP2_ERF	ERF110	ethylene response factor 110 ...		Potri.005G195000 [exp]	0	1
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G328000 [exp]	2.23	0.9550
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.002G228400 [exp]	3.16	0.9480
AT4G37290			unknown protein		Potri.007G049500 [exp]	5.47	0.9408
AT2G14095			unknown protein		Potri.002G101500 [exp]	6.00	0.9224
AT2G24580			FAD-dependent oxidoreductase f...		Potri.018G008700 [exp]	6.32	0.9163
					Potri.011G047300 [exp]	7.74	0.9219	PPO3
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G096042 [exp]	8.48	0.9206
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.012G121412 [exp]	9.89	0.9196
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.017G066860 [exp]	11.22	0.9141
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	12.44	0.8788

Compare expression of checked genes

Potri.005G195000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.