Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09810 543 / 0 Nucleotide-sugar transporter family protein (.1) AT1G34020 535 / 0 Nucleotide-sugar transporter family protein (.1) AT4G39390 483 / 1e-172 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT1G21070 274 / 3e-90 Nucleotide-sugar transporter family protein (.1) AT1G76670 271 / 4e-89 Nucleotide-sugar transporter family protein (.1) AT5G42420 268 / 5e-88 Nucleotide-sugar transporter family protein (.1.2) AT2G30460 188 / 6e-57 Nucleotide/sugar transporter family protein (.1.2) AT1G06890 186 / 3e-56 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G28315 179 / 1e-53 Nucleotide/sugar transporter family protein (.1) AT5G55950 84 / 8e-18 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G064700 [exp] 584 / 0 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G086700 [exp] 512 / 0 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.007G077900 [exp] 512 / 0 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.005G260300 [exp] 278 / 3e-92 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 277 / 1e-91 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.019G128900 [exp] 191 / 3e-58 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.013G154800 [exp] 186 / 5e-56 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.009G011100 [exp] 185 / 8e-56 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 183 / 6e-55 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006810 [exp] 486 / 9e-174 AT4G09810 542 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10005790 [exp] 478 / 1e-170 AT4G09810 536 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10033531 [exp] 458 / 7e-163 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10020837 [exp] 455 / 3e-161 AT4G09810 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10035824 [exp] 280 / 1e-92 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10036606 [exp] 279 / 2e-92 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10021464 [exp] 183 / 4e-55 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 171 / 2e-50 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10008596 [exp] 169 / 2e-49 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10037397 [exp] 170 / 3e-49 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.005G196500.1 pacid=42803492 polypeptide=Potri.005G196500.1.p locus=Potri.005G196500 ID=Potri.005G196500.1.v4.1 annot-version=v4.1 ATGGCTCCATCTAGCAAGGCTGATAAAAAGGGAGCTGCCGATGCGGGTGCCTGGATGTTCAATGTTGTCACTTCTGTTGGGATTATCATTGTCAATAAAG CCTTAATGGCTACTTATGGTTTTAGTTACGCCACGACACTAACTGGTATGCATTTTGCTACCACGACCTTGATGACTGTGGTTTTAAGGTGGTTGGGATA CATCCAAGCATCTCATCTACCTTTCCCTGAGCTTTTAAAATTTGTTGTCTTTGCAAATTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAATTCA GTGGGATTTTATCAGATTGCAAAGCTGAGTATAATTCCTGTATCCTGCCTGTTGGAAGTGTTTTTTGACAAGATTCGGTACTCACGAGACACAAAGCTAA GTATAGGAGTTGTTCTCTTGGGTGTTGGTGTTTGCACTGTCACTGATGTGAGTGTTAATGCCAAAGGATTCATTGCTGCCTTCATTGCAGTTTGGAGCAC TTCTCTGCAACAGTATTATGTACATTACCTCCAAAGGAAGTATTCACTAAGTTCTTTCAACCTCTTGGGTCACACTGCTCCATCCCAGGCTGCAACGCTG CTATTATTAGGCCCCTTTTTGGACTACTGGTTGACAAACAAAAGAATCGACACCTATGACTACAATGCAGTCTCTGTGATGTTTATCGTTCTATCATGCA TCATTGCAGTAGGGACCAACTTAAGCCAGTTCATCTGCATTGGCAGATTCACCGCTGTGTCCTTCCAAGTACTTGGTCATATGAAGACAGTACTTGTGCT TATCATGGGATTCTTTTTCTTCGGAAAAGATGGTCTTAATCTACATGTGGTTCTGGGCATGACCATAGCTGTAGTTGGAATGATTTGGTATAGCAATGCC TCATCTAAGCCTGGAGGAAAGGAGCGCAGGAGCCTCTCTCTTCCTACAAGCAGACAGCAAAAACCAAGTAATTTGTCAGAATCCAATGAACATGATGGTA AAGTCTAA
AA sequence Show only first row Show all	>Potri.005G196500.1 pacid=42803492 polypeptide=Potri.005G196500.1.p locus=Potri.005G196500 ID=Potri.005G196500.1.v4.1 annot-version=v4.1 MAPSSKADKKGAADAGAWMFNVVTSVGIIIVNKALMATYGFSYATTLTGMHFATTTLMTVVLRWLGYIQASHLPFPELLKFVVFANFSIVGMNVSLMWNS VGFYQIAKLSIIPVSCLLEVFFDKIRYSRDTKLSIGVVLLGVGVCTVTDVSVNAKGFIAAFIAVWSTSLQQYYVHYLQRKYSLSSFNLLGHTAPSQAATL LLLGPFLDYWLTNKRIDTYDYNAVSVMFIVLSCIIAVGTNLSQFICIGRFTAVSFQVLGHMKTVLVLIMGFFFFGKDGLNLHVVLGMTIAVVGMIWYSNA SSKPGGKERRSLSLPTSRQQKPSNLSESNEHDGKV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09810			Nucleotide-sugar transporter f...		Potri.005G196500 [exp]	0	1
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Potri.015G041700 [exp]	2.44	0.8027	PP2.5
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Potri.019G108900 [exp]	7.14	0.7175
AT5G47420			Tryptophan RNA-binding attenua...		Potri.001G155900 [exp]	10.00	0.7095
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054600 [exp]	12.64	0.7027	HSP70.4
AT1G55340			Protein of unknown function (D...		Potri.003G221000 [exp]	12.80	0.6966
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.004G177500 [exp]	14.56	0.7613
AT5G40580		PBB2	20S proteasome beta subunit PB...		Potri.017G071100 [exp]	14.83	0.8050	PBB1.1
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	15.49	0.6894
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Potri.015G034600 [exp]	15.87	0.7295	ATLCB1.2
AT4G32390			Nucleotide-sugar transporter f...		Potri.006G252500 [exp]	17.74	0.7390

Compare expression of checked genes

Potri.005G196500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.