Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09360 641 / 0 LAC14 laccase 14 (.1) AT5G48100 634 / 0 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT5G05390 546 / 0 LAC12 laccase 12 (.1) AT2G40370 539 / 0 LAC5 laccase 5 (.1) AT2G30210 528 / 0 LAC3 laccase 3 (.1) AT5G07130 516 / 1e-178 LAC13 laccase 13 (.1) AT5G03260 490 / 1e-168 LAC11 laccase 11 (.1) AT2G38080 486 / 3e-167 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G60020 482 / 3e-165 LAC17, ATLAC17 laccase 17 (.1) AT1G18140 479 / 6e-164 LAC1, ATLAC1 laccase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200600 [exp] 724 / 0 AT5G48100 607 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.011G071100 [exp] 712 / 0 AT5G48100 612 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200500 [exp] 710 / 0 AT5G48100 615 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.001G206200 [exp] 651 / 0 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.019G088800 [exp] 613 / 0 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088600 [exp] 612 / 0 AT5G09360 607 / 0.0 laccase 14 (.1) Potri.019G088700 [exp] 610 / 0 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088900 [exp] 610 / 0 AT5G09360 598 / 0.0 laccase 14 (.1) Potri.019G088401 [exp] 604 / 0 AT5G09360 592 / 0.0 laccase 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041067 [exp] 684 / 0 AT5G09360 622 / 0.0 laccase 14 (.1) Lus10006157 [exp] 592 / 0 AT5G09360 533 / 0.0 laccase 14 (.1) Lus10041066 [exp] 564 / 0 AT5G09360 555 / 0.0 laccase 14 (.1) Lus10026812 [exp] 549 / 0 AT5G09360 540 / 0.0 laccase 14 (.1) Lus10017427 [exp] 529 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10026512 [exp] 526 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10023189 [exp] 512 / 4e-177 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 509 / 4e-176 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10036070 [exp] 508 / 7e-176 AT5G09360 495 / 4e-171 laccase 14 (.1) Lus10035546 [exp] 505 / 2e-174 AT3G09220 710 / 0.0 laccase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.005G200700.1 pacid=42804789 polypeptide=Potri.005G200700.1.p locus=Potri.005G200700 ID=Potri.005G200700.1.v4.1 annot-version=v4.1 ATGTTATTCTGCAAGAAAACTTTAGTCTTCAAGATTTTATGGGTTCTACTTTTTTTCAGCGTCCATTGCTTGGCTGCAACTCATTATCATTTCAAGGTTA TGGAAGCTCCATATACAAGACTATGCAGCAAAAAGAAGATCTTGACTGTGAATGGACAATTTCCAGGACCAGCTTTACACGTTCATCATGGAGACACAAT CTATGTTACGGTCCATAACAAGGGCAGATATAACATCACCATCCACTGGCACGGCGTAAAACTGACTGGATATCCTTGGTCAGATGGTCCTGAATATATT ACACAGTGTCCAATCCAACCTGGAGGGAAGTTCAAGCAAAAGATCATATTTTCCACAGAGGAAGGCACCCTATGGTGGCATGCTCATAGTGACTGGTCGC GAGCGACGGTCCACGGGCCTATCATTGTGTATCCAAAGATTAATGGAACTGGCTATCCTTTTTCCAAACCTCTTGTGGAGGTCCCTATCATTTTAGGAGA ATGGTGGAAGAGAGATGTGATGGATGTTCTTCAGGAAGCGGTAATAACAGGAGGAGACCCCGCCGTCTCTGATGCTTTTACCATTAATGGCCAGCCTGGT GACCTGTACCCTTGTTCAAAGTCAGAAACAATAAAGCTAAATGTGCATCAAGGCAACAGTTACCTACTCCGGATAGTAAATGCTGCATTAAACACCATTC TATTCTTCTCAGTCGCGAAGCATAATCTTACAGTTGTCGGAATAGATGGCAGCTACGCCAAGCAATTGACAAGCGGCTACATAACTATAGCTAGTGGACA AACCATTGATGCTGTATTACATGCCAACCAAGATCCCAATCACTACTACATGGCTGCTAGGGCCTTCACTAGCAGCCCTTCTGTTGCTTTTGATAACACT ACCGCCACTGCTATAGTTCAATACAGTGGAGACTACACCCTTTCTTCATTTCCTTCCTTACCCCAACTCCCTTATTATGATGACACAAACGCAGCCTATA GCTTTCTTAGTAGCCTTAGGAGCTTAGCTGACGAAGACCATCCTGTTCGTGTTCCTTCAAATATTACCACTCGTATAGTTTCCACTCTTTCTGTTAACGC CTTACCTTGCCACAGAAACCGTTCATGTGAGGGTCCAAATGGAACCATTCTTGCTGCAAGCATGAACAATATAACCTTTGTGAACCCTTCAATTGATATA CTAGAAGCTTATTACAAGCATATCCATGGGGTGTATGGAGCTGATTTTCCTAGCTTTCCACCTTTGGTGTTTAATTTTACAGCTGATAATCTGCCATTGA TACTAGAAGTATCGAAAACAGGGACAGAAGTGAAAATATTGCCTTTTAATTCCGCGGTGGAAATTATTTTCCAGGGAACCAATGTGGTTGCTGGTGATGA TCATCCTATGCATCTCCATGGCTATAGCTTCTACATCGTTGGGTGGGGATATGGGAATTTTGACAAAGACAAGGACCCTCAAAACTACAATCTCATTGAT CCTCCATTTCGAAACACAGTGACTGTGCCTAGAAATGGCTGGACCACCATCAGATTTGAGGCTACCAATCCTGGAGTTTGGTTCATGCACTGTCATTTTG ACCGTCATCTAGTTTGGGGCATGGAGACTGTTTTCATCGTTCAGGATGGGACTGAAGCACGTTTATCACCTCCCCCACCGGACATGCCTCCTTGCTAA
AA sequence Show only first row Show all	>Potri.005G200700.1 pacid=42804789 polypeptide=Potri.005G200700.1.p locus=Potri.005G200700 ID=Potri.005G200700.1.v4.1 annot-version=v4.1 MLFCKKTLVFKILWVLLFFSVHCLAATHYHFKVMEAPYTRLCSKKKILTVNGQFPGPALHVHHGDTIYVTVHNKGRYNITIHWHGVKLTGYPWSDGPEYI TQCPIQPGGKFKQKIIFSTEEGTLWWHAHSDWSRATVHGPIIVYPKINGTGYPFSKPLVEVPIILGEWWKRDVMDVLQEAVITGGDPAVSDAFTINGQPG DLYPCSKSETIKLNVHQGNSYLLRIVNAALNTILFFSVAKHNLTVVGIDGSYAKQLTSGYITIASGQTIDAVLHANQDPNHYYMAARAFTSSPSVAFDNT TATAIVQYSGDYTLSSFPSLPQLPYYDDTNAAYSFLSSLRSLADEDHPVRVPSNITTRIVSTLSVNALPCHRNRSCEGPNGTILAASMNNITFVNPSIDI LEAYYKHIHGVYGADFPSFPPLVFNFTADNLPLILEVSKTGTEVKILPFNSAVEIIFQGTNVVAGDDHPMHLHGYSFYIVGWGYGNFDKDKDPQNYNLID PPFRNTVTVPRNGWTTIRFEATNPGVWFMHCHFDRHLVWGMETVFIVQDGTEARLSPPPPDMPPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200700 [exp]	0	1
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193200 [exp]	1.73	0.9571
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193300 [exp]	3.46	0.9485
AT4G25250			Plant invertase/pectin methyle...		Potri.012G127400 [exp]	6.48	0.8752
AT3G45070			P-loop containing nucleoside t...		Potri.010G138501 [exp]	6.92	0.9431
AT3G45070			P-loop containing nucleoside t...		Potri.010G138450 [exp]	7.48	0.9314
AT5G06790			unknown protein		Potri.016G047800 [exp]	10.19	0.9017
AT4G35160			O-methyltransferase family pro...		Potri.009G139800 [exp]	10.58	0.9164
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.007G119400 [exp]	10.67	0.8773
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032400 [exp]	10.72	0.9236
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.012G132000 [exp]	15.49	0.9234

Compare expression of checked genes

Potri.005G200700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.