Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 587 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 468 / 6e-146 transmembrane receptors;ATP binding (.1.2) AT5G17680 465 / 1e-145 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 447 / 3e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 422 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G44510 419 / 2e-129 TAO1 target of AVRB operation1 (.1) AT5G18360 410 / 7e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 398 / 2e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 395 / 2e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 391 / 1e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G056100 [exp] 1272 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 731 / 0 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 714 / 0 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 705 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G099700 [exp] 701 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 696 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 689 / 0 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 688 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 683 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018616 [exp] 907 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 897 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 677 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 607 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 524 / 5e-168 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 520 / 4e-167 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 491 / 2e-157 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10033825 [exp] 463 / 2e-149 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 474 / 6e-149 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 466 / 6e-147 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.005G206400.2 pacid=42803743 polypeptide=Potri.005G206400.2.p locus=Potri.005G206400 ID=Potri.005G206400.2.v4.1 annot-version=v4.1 ATGGCTTCCTCCAACTCCAACTCATCAAAATGGGATTATGATGTGTTCTTGAGTTTTAAGGGTGCAGACACAGGGAAAGGTTTCACAGACCATTTATATT CTGCTTTGGTTCGAGATGGAATCCACACATTTAGAGATGTTAATGAGATCAATAGTGGTGAAGAAATTGGACCCGAGTATCTTCAAGCAATTGAGAAGTC AAGGTTTTCTATTGTCATTCTCTCAAAAGGCTATGCATCCTCCACTTGGTGTCTTGATGAGCTTGTGCACATCCTCGAATGTAGAAAAGAAGGAGGTCAT GCTGTTTGGCCTGTCTTTTATGACATAGATCCATCTGACGTTGAAGAGCTGAAAGGGAGTTTTGAAGAAGCTTTTGCTGAACATGAAAAGAGTTTCAAGG ATGACATGGATAAAGTGCAGAGATGGAAGGATGCTCTCAGAGAAGTTGCTTACCTCAAGGGCCTGGATCTACAAAAACATTGGGATGGGCATGAAGCAAA AAATATTGACTATATTGTTAAGGAGATTTCAGACAGACTTGACCGAACAATCTTGAGTGTCACTACACACCCAGTTGGTTTGCTTTCTCGTGCAAAAGAG GTGATTTCATTGCTAGGTGAAAAGCTAGTAGATGTCCGTATAGTTGGGATATATGGGATGGGGGGTATAGGCAAAACGACTGTTGCCAAGAAGGTTTACA ATTTAGTCTTCCATGAATTTGAAGGTAGCTGCTTCCTTGAAAATGTTAGAAAAGAATCAATTTCCAAGGGCATAGCCTGCTTACAGAGGCAACTTCTCTC GGAGACCTTGAAAAGAAAACATGAAAAGATAGACAACATTAGTAGAGGATTGAACGTGATAAGAGACAGGCTGCATCGGAAGCGCATTTTCATTGTTCTG GATGACATTGATGAACTAGAACAGCTGAATAAGATTCTTGGAAATTTCGACTGGCTTTTTCCAGGAAGCAGGGTGATAATAACAACTAGAATCAAGGATC TGCTACAACCATCAGAGTTGTATCTACAATACGAGGTTGAGGAACTGAATAACGATGACTCTCTTCAGCTCCTACGTTTACATGCCTTTAATGAACACCA TCCCGTTGATAATTACATGGATTGCATGAGAAGAATTGTATCTTATGTTAGAGGAATTCCTCTAGCTCTTGAAGTCTTGGGCTCTTCTTTGTGCGGCCAA ACCATCAATGTATGGAATAGCAAGTTGGAAAAGCTGAAAGTGATTGGCAACGGAGACATCCACAACAAACTTAAAATAAGTAATGATTCTCTTGATGATA CTGAGAAATTTATATTTCTAGATATTGCATGTTTCTTCATTGGATTTAACAAGGATTACATCATGAGCATACTTGAAGATTGTGGTTTCTTTCCTGCTGA TGGAATTAATACTCTCATGAGGAGGTGCATTGTAAAAGTTGGACCTGATAATAAGTTATCGATGCATGATTTGCTTAGGGACATGGGAAGAGAGATCGTT CGCCAAGAGTCTTCTACAGATCCCGGGGAACGTAGCAGACTGTGGCGCCAAGAAGATGTCATCGATGTAATAACTGACCGAATGGGTACAAAAGCAGTTG AAGGCCTCATTCTAAACCTGCCAGGATTAAAACAGTCGTTTAGTACCAAGGCATTCAAAAAGATGAAAAAGCTACGACTGCTGCAACTCAATTGCATATG CCTTGAAGGAAGCTATGAATATATTTCCACTAAATTAAGGTGGCTGTGCTGGCTTGAATTCCCTTTGAAATCAATACCACCTGATCTTTATTTGGAAACT TTGATTGCTCTAGATATGCGCTATAGCAGTCTACACCAGTTTTCGGAGGAAATAAAGTCTCTTAAAAAGCTGAAATTCCTCAACCTTAGCCACTCCCATG AGCTCACCAAGACTCCTAACTTCGAAGGCTTACCTTGTCTTGAAAAATTGATACTTAAAGATTGCGTTAGTTTGGTAGAGGTTCATGACTCCATTGGAAT TCTTGGTCGTCTTCTTCTTCTGAATTTCAAAAATTGCAAGAGCCTTAAAACTCTTCCAGGGAGCATCTGTGCTCTAAGCTCACTTAAGAAGCTAAATGTG TCAGGTTGCTTGAAACTTGAGGGATTGCCTGAAGATTTGGGGAGTCTGAAATCCTTGGTTGTTCTTCTTGCTGATGGAACTGCAATAAGTACTATTCCAG AAACCATTGGAAATCTAGAAAAACTTAAAATATTGTCTTTTCATGATTGTCATCTTATCTTTTCCCCAAGAAAATTTCCACAAACAATGAACATCTTCCC AGCTTCTTTACAAGAACTAGATCTCAGACACTGCAACTTATCTGATTCCATGATTCCGCATGATTTTCGAGGCTTATTCCTTCTGCAAACTTTGAAATTA TGCGGGAACAACTTTACAAGCTTACCAGCTAGCATTGGAAACCTTCCTAAGCTTACAAAACTTTTGCTAAACAACTGCAAAAGACTGGAGTACATCCCAG AGCTTCAGTCAAGCTTGGAAACATTCCATGCAAATGATTGCCCTAGGCTGCAATTTATTAACATGAAATTCTGGCGAGGAGGAGAGCTGAAATTGAATGG TTGCCGAAACTTAAAATGCTTGCAGGGATTTTTCAACTTGGAACCCTTAGGAGTGGACGTTGTGGAAAAAATTCTTGGAACTTGTGGCTTGGTCACGGAA AAACCTTTCCCAGCTGTTGAAGTGCATATAATTAATAATCTGACAAGAACTGCTATAATTAGCCCTCTACAGGTTTCTTATCTCTCCCTCTGA
AA sequence Show only first row Show all	>Potri.005G206400.2 pacid=42803743 polypeptide=Potri.005G206400.2.p locus=Potri.005G206400 ID=Potri.005G206400.2.v4.1 annot-version=v4.1 MASSNSNSSKWDYDVFLSFKGADTGKGFTDHLYSALVRDGIHTFRDVNEINSGEEIGPEYLQAIEKSRFSIVILSKGYASSTWCLDELVHILECRKEGGH AVWPVFYDIDPSDVEELKGSFEEAFAEHEKSFKDDMDKVQRWKDALREVAYLKGLDLQKHWDGHEAKNIDYIVKEISDRLDRTILSVTTHPVGLLSRAKE VISLLGEKLVDVRIVGIYGMGGIGKTTVAKKVYNLVFHEFEGSCFLENVRKESISKGIACLQRQLLSETLKRKHEKIDNISRGLNVIRDRLHRKRIFIVL DDIDELEQLNKILGNFDWLFPGSRVIITTRIKDLLQPSELYLQYEVEELNNDDSLQLLRLHAFNEHHPVDNYMDCMRRIVSYVRGIPLALEVLGSSLCGQ TINVWNSKLEKLKVIGNGDIHNKLKISNDSLDDTEKFIFLDIACFFIGFNKDYIMSILEDCGFFPADGINTLMRRCIVKVGPDNKLSMHDLLRDMGREIV RQESSTDPGERSRLWRQEDVIDVITDRMGTKAVEGLILNLPGLKQSFSTKAFKKMKKLRLLQLNCICLEGSYEYISTKLRWLCWLEFPLKSIPPDLYLET LIALDMRYSSLHQFSEEIKSLKKLKFLNLSHSHELTKTPNFEGLPCLEKLILKDCVSLVEVHDSIGILGRLLLLNFKNCKSLKTLPGSICALSSLKKLNV SGCLKLEGLPEDLGSLKSLVVLLADGTAISTIPETIGNLEKLKILSFHDCHLIFSPRKFPQTMNIFPASLQELDLRHCNLSDSMIPHDFRGLFLLQTLKL CGNNFTSLPASIGNLPKLTKLLLNNCKRLEYIPELQSSLETFHANDCPRLQFINMKFWRGGELKLNGCRNLKCLQGFFNLEPLGVDVVEKILGTCGLVTE KPFPAVEVHIINNLTRTAIISPLQVSYLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.005G206400 [exp]	0	1
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.003G125900 [exp]	1.00	0.8068
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Potri.014G101400 [exp]	3.00	0.7930
AT5G48440			FAD-dependent oxidoreductase f...		Potri.014G177300 [exp]	4.47	0.7867
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.012G142700 [exp]	7.74	0.7590
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	8.06	0.7678
AT4G09970			unknown protein		Potri.013G102300 [exp]	9.53	0.7541
AT1G26100			Cytochrome b561/ferric reducta...		Potri.010G131100 [exp]	12.48	0.7955
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.005G121600 [exp]	16.88	0.6818
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.001G383600 [exp]	18.70	0.7520
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.010G145900 [exp]	18.73	0.7530

Compare expression of checked genes

Potri.005G206400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.