Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08230 226 / 7e-69 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT2G39890 186 / 8e-54 ATPROT1, ProT1 proline transporter 1 (.1.2) AT3G55740 186 / 1e-53 ATPROT2, ProT2 proline transporter 2 (.1.2) AT5G41800 183 / 2e-52 Transmembrane amino acid transporter family protein (.1) AT2G36590 179 / 2e-51 ATPROT3, ProT3 proline transporter 3 (.1) AT5G09220 152 / 1e-40 AAP2 amino acid permease 2 (.1) AT1G44100 144 / 5e-38 AAP5 amino acid permease 5 (.1) AT5G40780 141 / 4e-37 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G77380 140 / 2e-36 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G63850 139 / 3e-36 AAP4 amino acid permease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026700 [exp] 227 / 3e-69 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 222 / 3e-67 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 219 / 2e-66 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.003G138100 [exp] 204 / 1e-60 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G093600 [exp] 203 / 4e-60 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G068900 [exp] 170 / 2e-47 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 169 / 4e-47 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.010G194600 [exp] 164 / 1e-45 AT2G39890 702 / 0.0 proline transporter 1 (.1.2) Potri.008G062900 [exp] 159 / 1e-43 AT2G39890 687 / 0.0 proline transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009386 [exp] 209 / 2e-62 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10038639 [exp] 209 / 3e-62 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 177 / 1e-50 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10009877 [exp] 161 / 7e-44 AT2G39890 700 / 0.0 proline transporter 1 (.1.2) Lus10036777 [exp] 154 / 8e-42 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 154 / 2e-41 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 152 / 7e-41 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 152 / 8e-41 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 150 / 2e-40 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042744 [exp] 149 / 4e-40 AT1G77380 667 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.005G219300.1 pacid=42803339 polypeptide=Potri.005G219300.1.p locus=Potri.005G219300 ID=Potri.005G219300.1.v4.1 annot-version=v4.1 ATGTCACTTAACTCGACAGGGAAAGCTGATGAAGACGAAAGAAGAGAAGATGTAGCTGTAGCTGCAGTAGAAAGACAAGATTCAAGAGAAGTTGATGAAG GCAAAGGCACTTGGAAACACGCAGCGTTCCATGTTGCCACAACAATTGCTACCCCTGCTGCTTATGCTCCTTTACCGTTTGCTCTCGCTTCTCTTGGCTG GCCCCTTGGGGTGAGTAGTTTGGTAGGTGCAACACTGGCCACCTGGTACTCGAGTCTATTGATTGCGTCTTTGTGGAGATGGAATGGGAAGAAGCAGATC ACATATAGGCATCTCGCAGAAAGCATCTTCGGATTCTGGGGTTACTGGTCCATTGCATTTTTTCAGCAGGTGGCTTCTTTGGGCAATAACATTGCAATTC AAATTGCTGCCGGAAGCAGCCTCAAGGCTGTTTACAAGCACTATCACAAAGAGGGTACGCTGACCTTGCAGCATTTTATTATCTTCTTTGGAGCCTTTGA ACTTTTTCTCTCTCAACTCCCTGATATCCACTCGTTGAGATGGGTCAATGCGTTGTGCACGTTCAGCACGATCGGCTTTGCTGGCACAACAATTGGCGTG ACATTGTATAATGGTAAGAATATGGATAGAAAATCAGTCAGTTACAGTGTGCAAGGGAGCTCCTCTCTTAAGAGATTTAAAGCCTTCAATGCTTTGGGGG CAATTGCCTTTTCATTTGGAGATGCGATGCTTCCAGAAATACAGAACACTGTAAAAGAGCCTGCAAAAAAGAACTTGTATAAAGGTGTATCAGCAGCATA CACCGTTATTATCTTGACTTACTGGCAATTGGCATTCTGTGGATACTGGGCATTTGGGTCAGAAGTTCAGCCTTACATTTTGGCTTCTCTGACTGTTCCA GAATGGACAATTGTCATGGCAAATCTCTTCGCAGTTATTCAGATATCAGGATGCTATCAGATATATTGCAGGCCAACGTATGCCTACTTCGAGAACAACA TGCTGCGGAGCAAGACTGCCAGCTACTTCCCTCTCAAAAACTGCCTAATTCGGCTGGTGTGCACCTCCATTTACATTGTTCTTATCACCCTCATTGCTGC AGCGATGCCCTTTTTTGGTGACTTTGTATCCATATGTGGTGCCATTGGGTTTACTCCGTTGGATTTTGTTTTCCCTGCCATAGCATATTTGAAATCTGGA AGAATTCCGAAAAACATGGAGCTTCGCATATCAGTGCAGCTCCTTAATTTAGCTATAGCTACCTGGTTCTCAGTTGTTGCAGTATTGGGTTGCATTGGTG CTGTCAGGTTTATTGTGGAAGATATCAAGACCTACAAGTTCTTTCATGACTTGTAA
AA sequence Show only first row Show all	>Potri.005G219300.1 pacid=42803339 polypeptide=Potri.005G219300.1.p locus=Potri.005G219300 ID=Potri.005G219300.1.v4.1 annot-version=v4.1 MSLNSTGKADEDERREDVAVAAVERQDSREVDEGKGTWKHAAFHVATTIATPAAYAPLPFALASLGWPLGVSSLVGATLATWYSSLLIASLWRWNGKKQI TYRHLAESIFGFWGYWSIAFFQQVASLGNNIAIQIAAGSSLKAVYKHYHKEGTLTLQHFIIFFGAFELFLSQLPDIHSLRWVNALCTFSTIGFAGTTIGV TLYNGKNMDRKSVSYSVQGSSSLKRFKAFNALGAIAFSFGDAMLPEIQNTVKEPAKKNLYKGVSAAYTVIILTYWQLAFCGYWAFGSEVQPYILASLTVP EWTIVMANLFAVIQISGCYQIYCRPTYAYFENNMLRSKTASYFPLKNCLIRLVCTSIYIVLITLIAAAMPFFGDFVSICGAIGFTPLDFVFPAIAYLKSG RIPKNMELRISVQLLNLAIATWFSVVAVLGCIGAVRFIVEDIKTYKFFHDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.005G219300 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	2.00	0.9234
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.001G157600 [exp]	2.44	0.9141
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Potri.007G115900 [exp]	4.89	0.9055
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	4.89	0.9124
AT3G13620			Amino acid permease family pro...		Potri.001G007200 [exp]	5.19	0.9030	PtrLAT1
AT5G47860			Protein of unknown function (D...		Potri.003G158400 [exp]	5.65	0.9177
AT1G68300			Adenine nucleotide alpha hydro...		Potri.008G121900 [exp]	6.32	0.8829
AT1G25520			Uncharacterized protein family...		Potri.008G117900 [exp]	7.07	0.9061
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Potri.010G034300 [exp]	8.66	0.8874	NTL1.1
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	9.16	0.8946

Compare expression of checked genes

Potri.005G219300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.