Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50640 84 / 3e-20 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT1G28360 84 / 3e-20 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT5G44210 84 / 3e-20 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT3G20310 81 / 8e-19 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT5G13910 80 / 1e-18 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT3G15210 78 / 4e-18 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G53170 76 / 2e-17 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT1G12980 78 / 3e-17 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G24590 77 / 3e-17 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT1G28370 73 / 1e-16 AP2_ERF AtERF11 ERF domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G043300 [exp] 218 / 3e-73 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.004G047500 [exp] 87 / 1e-21 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.011G056900 [exp] 86 / 2e-21 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.003G077700 [exp] 83 / 1e-19 AT5G13910 118 / 3e-32 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.004G047600 [exp] 82 / 3e-19 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.017G013700 [exp] 79 / 2e-18 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.007G138100 [exp] 79 / 3e-18 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.003G161000 [exp] 79 / 5e-18 AT1G28160 128 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.001G356100 [exp] 78 / 6e-18 AT1G50640 108 / 7e-29 ethylene responsive element binding factor 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035129 [exp] 84 / 7e-20 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10039857 [exp] 81 / 6e-19 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10035329 [exp] 81 / 2e-18 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10015415 [exp] 79 / 5e-18 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10035076 [exp] 79 / 1e-17 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10033664 [exp] 77 / 1e-17 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10031526 [exp] 77 / 2e-17 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10029987 [exp] 73 / 8e-17 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10017907 [exp] 73 / 1e-15 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10033963 [exp] 73 / 1e-15 AT5G18560 186 / 4e-56 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.005G219600.1 pacid=42804543 polypeptide=Potri.005G219600.1.p locus=Potri.005G219600 ID=Potri.005G219600.1.v4.1 annot-version=v4.1 ATGATTGTCACAACAACCCTCTCCCTTGCTGGTTCTTCATCTCCTTCCTCTCCAGCAGTACAGGCGAAGAATGAGCCTCAACGCCATTTCAGAGGCGTGA GGAAGAGGCCGTGGGGTCGATTTGCTGCTGAGATTCGTGATCCATGGAAGAAGAAGCGGAGTTGGCTTGGCACTTTTGACACAGCGGAGGAGGCGGCACT TGCTTACGACGAGGCAGCTCGATCTCTACGTGGGCCAAAGGCAAGGACAAACTTCTTCCACAACGATCATTTTGCTCCCGTGCCATTTTCGCAAACTGCG GTGGTTGGTGCAGGTGTTTTTGAGAAATGTTGCTCGCCGGTTTGTCTTGCTGGTGAGGTGGCGAGGATGACGATGCCAGCGGCATCTCCGGTGAGGTCAG AGTATACGGGGTACAACATGGAGACAGTGAATGAAAACGTGGGTTTGGTTTTAAATGAAGAGAAGAAGTTGCGTGGAGGGAAAAAACCTTTTTTGTTTGA TTTGAACTTGCCGGCACCGCTCTTTTGA
AA sequence Show only first row Show all	>Potri.005G219600.1 pacid=42804543 polypeptide=Potri.005G219600.1.p locus=Potri.005G219600 ID=Potri.005G219600.1.v4.1 annot-version=v4.1 MIVTTTLSLAGSSSPSSPAVQAKNEPQRHFRGVRKRPWGRFAAEIRDPWKKKRSWLGTFDTAEEAALAYDEAARSLRGPKARTNFFHNDHFAPVPFSQTA VVGAGVFEKCCSPVCLAGEVARMTMPAASPVRSEYTGYNMETVNENVGLVLNEEKKLRGGKKPFLFDLNLPAPLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.005G219600 [exp]	0	1
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.010G234100 [exp]	2.23	0.8584	MANS.2
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.016G071000 [exp]	4.00	0.8461
AT5G11070			unknown protein		Potri.003G070750 [exp]	6.00	0.8297
AT5G46080			Protein kinase superfamily pro...		Potri.004G049200 [exp]	10.81	0.7947
AT3G08760		ATSIK	Protein kinase superfamily pro...		Potri.006G108200 [exp]	10.95	0.7763
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.005G116800 [exp]	11.31	0.8148
AT1G27190			Leucine-rich repeat protein ki...		Potri.004G081700 [exp]	12.24	0.7706
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.007G014400 [exp]	14.07	0.8235
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.006G228600 [exp]	14.07	0.8318
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	17.43	0.7838

Compare expression of checked genes

Potri.005G219600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.