Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23250 255 / 1e-84 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT2G31180 252 / 5e-84 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT1G06180 227 / 2e-74 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT4G21440 214 / 6e-68 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 208 / 2e-66 MYB ATMYB41 myb domain protein 41 (.1) AT4G05100 206 / 4e-65 MYB ATMYB74 myb domain protein 74 (.1) AT1G16490 203 / 2e-64 MYB ATMYB58 myb domain protein 58 (.1) AT3G02940 203 / 4e-64 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 203 / 9e-64 MYB ATMYB9 myb domain protein 9 (.1.2) AT1G79180 200 / 3e-63 MYB ATMYB63 myb domain protein 63 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038500 [exp] 466 / 2e-168 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.008G166700 [exp] 278 / 5e-94 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.019G018200 [exp] 228 / 6e-75 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G149200 [exp] 210 / 2e-67 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118200 [exp] 213 / 3e-67 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.004G033100 [exp] 213 / 4e-67 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 212 / 6e-67 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.013G148600 [exp] 211 / 2e-66 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.001G086700 [exp] 204 / 4e-65 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003557 [exp] 268 / 2e-89 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10033889 [exp] 249 / 3e-82 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10041145 [exp] 237 / 3e-78 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10021185 [exp] 232 / 4e-76 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10011820 [exp] 229 / 5e-75 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10021871 [exp] 220 / 9e-72 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10022021 [exp] 213 / 3e-69 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10042561 [exp] 209 / 4e-68 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10039743 [exp] 206 / 5e-66 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10014784 [exp] 204 / 2e-64 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G224100.1 pacid=42805014 polypeptide=Potri.005G224100.1.p locus=Potri.005G224100 ID=Potri.005G224100.1.v4.1 annot-version=v4.1 ATGGTGAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAAAGGTCCATGGACTGCTGAGGAAGATCAGATTCTCATCAATTACATTCAACTTCACGGCC ATGGCAATTGGCGTGCACTGCCTAAACAAGCTGGTTTACTGAGGTGTGGAAAGAGCTGCAGGCTCCGATGGATAAATTACTTGAGGCCCGACATCAAACG AGGAAATTTCAGCAGAGAAGAAGAGGATACCATCATCAAATTGCATGAGATGTTAGGAAACAGATGGTCTGCAATTGCAGCAAGATTACCGGGACGCACG GACAACGAAATTAAAAATGTTTGGCACACCCACTTGAAAAAAAGACTTGAGAAAAATCATGTCACCCCAGAAATCAAGGGAAGATCCGTTGATATTTCTA GATTTGATCACGAATTAAATACAGATCAAGAATTACTCGATTCATCAAATCTTGCAGCAGGATCTGATCAGACCGAGGAACACAGACCAATCTCCCCGCA ACAATGTTCAAGTGACACCTCCTCTTTGATCACAGGTGATATTGATATCAGTAATAACATGTGCATGAAGATCGAGTCGTCGGATGATTTTCCTGAAATG GATGAGAGTTTTTGGTCAGAAGTATTGTCTGCTGATAATTCAAGAATTGTGAGTGATTTTTCGGCCATTGGCACTGAGCCACAACTTCAATTTCCATTTT CTCCACTAGTAATTGAGGTGGAACAAGTCTATGCCACTAATTCAAATATGTATGATAGCACTGAATATTGGCACGACCTTTTCACAAGAGCTGGGGGATC ACTAGATTTACCAGAAATTTGA
AA sequence Show only first row Show all	>Potri.005G224100.1 pacid=42805014 polypeptide=Potri.005G224100.1.p locus=Potri.005G224100 ID=Potri.005G224100.1.v4.1 annot-version=v4.1 MVRAPCCEKMGLKKGPWTAEEDQILINYIQLHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSREEEDTIIKLHEMLGNRWSAIAARLPGRT DNEIKNVWHTHLKKRLEKNHVTPEIKGRSVDISRFDHELNTDQELLDSSNLAAGSDQTEEHRPISPQQCSSDTSSLITGDIDISNNMCMKIESSDDFPEM DESFWSEVLSADNSRIVSDFSAIGTEPQLQFPFSPLVIEVEQVYATNSNMYDSTEYWHDLFTRAGGSLDLPEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.005G224100 [exp]	0	1
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.005G068700 [exp]	1.00	0.9699
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088222 [exp]	3.46	0.9569
AT2G27310			F-box family protein (.1)		Potri.009G160700 [exp]	4.24	0.9531
AT5G49620	MYB	ATMYB78	myb domain protein 78 (.1.2)		Potri.014G117000 [exp]	4.58	0.9433	Pt-MYB.47
AT4G37640		ACA2	calcium ATPase 2 (.1)		Potri.007G055500 [exp]	6.00	0.9437	Pt-ACA2.1
					Potri.006G128250 [exp]	6.24	0.9280
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.008G132775 [exp]	6.92	0.9268
AT5G65280		GCL1	GCR2-like 1 (.1)		Potri.007G096500 [exp]	9.59	0.9208
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.010G077000 [exp]	10.24	0.9471
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G004900 [exp]	12.00	0.9182

Compare expression of checked genes

Potri.005G224100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.