Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54220 424 / 3e-142 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 349 / 3e-116 GRAS GRAS family transcription factor (.1) AT1G66350 228 / 2e-68 GRAS RGL1 RGA-like 1 (.1) AT1G14920 221 / 2e-65 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 221 / 8e-65 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G63100 218 / 4e-63 GRAS GRAS family transcription factor (.1) AT3G03450 214 / 9e-63 GRAS RGL2 RGA-like 2 (.1) AT5G17490 208 / 1e-60 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G66770 185 / 1e-51 GRAS GRAS family transcription factor (.1) AT2G04890 173 / 9e-49 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036100 [exp] 936 / 0 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G114200 [exp] 414 / 4e-136 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.016G143833 [exp] 413 / 5e-136 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G021400 [exp] 350 / 6e-116 AT5G41920 509 / 2e-180 GRAS family transcription factor (.1) Potri.016G018900 [exp] 347 / 4e-115 AT5G41920 506 / 5e-179 GRAS family transcription factor (.1) Potri.001G326000 [exp] 248 / 4e-74 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 235 / 4e-70 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.003G122400 [exp] 234 / 5e-69 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.010G110700 [exp] 229 / 5e-68 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033912 [exp] 711 / 0 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10003540 [exp] 696 / 0 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10016496 [exp] 380 / 3e-124 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 376 / 5e-123 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10041540 [exp] 253 / 4e-76 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 253 / 4e-75 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10006322 [exp] 224 / 2e-66 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 226 / 5e-66 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10010462 [exp] 221 / 5e-66 AT5G41920 327 / 2e-108 GRAS family transcription factor (.1) Lus10017626 [exp] 221 / 9e-65 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.005G226800.1 pacid=42802687 polypeptide=Potri.005G226800.1.p locus=Potri.005G226800 ID=Potri.005G226800.1.v4.1 annot-version=v4.1 ATGATGAAGGGAGCATACGAAGTGGTTCATGGGGCTCTTAATATGATACAGCCCCATGAAACATGGGACTATGCCTCTGTAGGATTCCCGGCTCCAATTT CGAACCCCTTTCCAAAGCCTGCAGTGATTGAAAATCGATGCCTAAACTTGGAGAGGAATGAGCTCTCTGAGTGGGTTGAACATGTAACCAAGCAGCTCAT TGATGACTTGCCGGATATAGCAACTGATCATGATGAAAGCTTGCAAACAGACACAACAACGGTCTATGGGGGCAACGATATTGTCTCGTCACTCTTGGGT GAGTTTAGGCCAAAGAAATATATGAGGAGAAGCTATTTTGATGGAAATGGGGAAGAGCTCCAATGGAGCCATGAGCTTGGAGTACACCAAACAAACATTT CTGAAAAAGAAGGGAGCACTAGATCACCAAGCATGAGTAGGATAGATGAAAATGGTTTGAGCTTAATAACCCTTCTTTTGGAGTGTGCTGTTGCTATATC AGTCGATAATCTTGGTGAAGCTCATAGAATGTTGCTTGAGCTGACCCAGATGGCTTCTCCTTACGGCCCTTCTTGTGCTGAAAGGGTTGTGGCTTATTTT TCTAAGGCCATGGGTAGTAGGGTTATTAACTCATGGCTAGGTATTTGCTCTCCGTTAATCAACCACAAGAGCATTCATGGCGCCTTCCAAGTCTTCAACA ATGCCTCTCCTTTTATCAAATTTGCTCACTTCACCTCCAACCAATCAATCCTAGAAGCTTTTCATCGCCGCGATAGGGTTCACGTAATTGACCTCGATAT CATGCAAGGCTTGCAATGGCCGGCCTTATTTCACATCCTAGCCACCAGAATTGACGGTCCACCCCAAGTTCGAATGACCGGCATGGGCACATCAATGGAA CTCTTACTGGAGACTGGGAGACAACTTTCCAATTTCGCTAAGCGACTTGGAATGTCGTTTGAGTTCCACCCAATTGCAAAGAAATTTGGAGAAATTGATG CCTCGATGGTGCCACTCAGGAGAGGTGAAACAGTAGCCGTGCATTGGCTACAGCATACCCTCTATGATGCCACAGGACCTGATTGGAAGACATTGAGACT ACTCGAAGCAGTGGCCCCAAGAGTGATCACTCTAGTTGAGCAAGACATCTCACATGGTGGATCTTTCTTGGACCGTTTCGTAGGCTCTCTGCATTACTAC TCAACATTGTTTGATTCCCTCGGTGCATATTTGCCTTGCGATGATCCTGGCAGGCACCGCATAGAGCATTGCCTTCTCTACAGAGAAATCAATAATATAT TGGCAATAGGAGGGCCTGCAAGAAGCGGCGAGGACAAGTTCAGGCAATGGAGAAGTGAGCTAGCTAGAAGCTCGTTCATGCAGGTGCCAATGAGTGGAAA CTCAATGGCCCAAGCACAGCTTATACTGAACATGTTCCCTCCCGCTCATGGCTATAACCTTGAACAAGGAGAGGGAACATTGAGGCTGGGTTGGAAGGAT ACTAGCTTGTTCACTGCATCTGCTTGGACTACACGTGCTTCTAGATGGCCTCTAATTAATTAA
AA sequence Show only first row Show all	>Potri.005G226800.1 pacid=42802687 polypeptide=Potri.005G226800.1.p locus=Potri.005G226800 ID=Potri.005G226800.1.v4.1 annot-version=v4.1 MMKGAYEVVHGALNMIQPHETWDYASVGFPAPISNPFPKPAVIENRCLNLERNELSEWVEHVTKQLIDDLPDIATDHDESLQTDTTTVYGGNDIVSSLLG EFRPKKYMRRSYFDGNGEELQWSHELGVHQTNISEKEGSTRSPSMSRIDENGLSLITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYF SKAMGSRVINSWLGICSPLINHKSIHGAFQVFNNASPFIKFAHFTSNQSILEAFHRRDRVHVIDLDIMQGLQWPALFHILATRIDGPPQVRMTGMGTSME LLLETGRQLSNFAKRLGMSFEFHPIAKKFGEIDASMVPLRRGETVAVHWLQHTLYDATGPDWKTLRLLEAVAPRVITLVEQDISHGGSFLDRFVGSLHYY STLFDSLGAYLPCDDPGRHRIEHCLLYREINNILAIGGPARSGEDKFRQWRSELARSSFMQVPMSGNSMAQAQLILNMFPPAHGYNLEQGEGTLRLGWKD TSLFTASAWTTRASRWPLIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.005G226800 [exp]	0	1
					Potri.019G016110 [exp]	1.73	0.9748
AT3G22800			Leucine-rich repeat (LRR) fami...		Potri.010G083000 [exp]	3.16	0.9643
					Potri.018G118900 [exp]	4.24	0.9639
AT3G03280			unknown protein		Potri.017G121200 [exp]	6.32	0.9227
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Potri.011G118600 [exp]	6.48	0.9547
AT2G45360			Protein of unknown function (D...		Potri.014G068900 [exp]	7.21	0.9587
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.004G090600 [exp]	9.74	0.9582
AT3G05220			Heavy metal transport/detoxifi...		Potri.005G120200 [exp]	10.48	0.9478
AT2G45220			Plant invertase/pectin methyle...		Potri.002G145500 [exp]	13.85	0.9539	Pt-PE9.2
AT5G37970			S-adenosyl-L-methionine-depend...		Potri.017G122000 [exp]	14.07	0.9565

Compare expression of checked genes

Potri.005G226800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.