Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PETE.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20340 192 / 3e-63 PETE2, DRT112 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) AT1G76100 190 / 2e-62 PETE1 plastocyanin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G016000 [exp] 228 / 1e-77 AT1G20340 185 / 1e-60 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004155 [exp] 200 / 2e-66 AT1G20340 221 / 8e-75 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) Lus10034554 [exp] 192 / 4e-63 AT1G20340 218 / 1e-73 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) Lus10005628 [exp] 177 / 7e-58 AT1G76100 190 / 4e-63 plastocyanin 1 (.1) Lus10021839 [exp] 169 / 4e-55 AT1G20340 170 / 2e-55 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00127 [poplar] [flax] Copper-bind Copper binding proteins, plastocyanin/azurin family
Representative CDS sequence Show only first row Show all	>Potri.005G246100.1 pacid=42805059 polypeptide=Potri.005G246100.1.p locus=Potri.005G246100 ID=Potri.005G246100.1.v4.1 annot-version=v4.1 ATGGCCACTGTCACCTCTGCTGCTGTTTCAATCCCTTCTTTCACCGGTCTTAAGGCAGGCAGTGCCTCCAATGCTAAAGTCAGTGCCAGTGCCAAGGTCT CAGCCTCTCCACTCCCAAGGCTCAGCATCAAGGCCTCAATGAAAGACGTTGGTGCTGCCGTTGTCGCCACCGCTGCTAGCGCAATGATTGCTAGCAATGC TATGGCCATCGACGTCTTGCTTGGAGCTGACGATGGATCATTGGCTTTTGTTCCCAGCGAGTTCTCCATATCCCCTGGTGAAAAGATCGTCTTCAAGAAC AATGCCGGATTCCCACACAACATTGTCTTCGACGAGGATTCTATTCCAAGTGGGGTTGATGCGTCAAAAATCTCCATGAGTGAGGAGGATCTCCTCAATG CCAAAGGAGAGACTTTCGAAGTTGCCTTGAGTAACAAAGGCGAATACAGCTTCTACTGTTCTCCTCACCAGGGAGCTGGCATGGTGGGAAAAGTTACCGT TAATTAA
AA sequence Show only first row Show all	>Potri.005G246100.1 pacid=42805059 polypeptide=Potri.005G246100.1.p locus=Potri.005G246100 ID=Potri.005G246100.1.v4.1 annot-version=v4.1 MATVTSAAVSIPSFTGLKAGSASNAKVSASAKVSASPLPRLSIKASMKDVGAAVVATAASAMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKN NAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Potri.005G246100 [exp]	0	1	Pt-PETE.1
AT4G24700			unknown protein		Potri.012G086000 [exp]	1.00	0.9754
					Potri.001G394900 [exp]	1.41	0.9701
AT5G41761			unknown protein		Potri.003G136700 [exp]	2.00	0.9598
AT4G29400			Protein of unknown function (D...		Potri.014G148300 [exp]	4.24	0.9630
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.012G040900 [exp]	4.24	0.9342
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.009G111446 [exp]	5.47	0.9579
AT3G04890			Uncharacterized conserved prot...		Potri.013G036500 [exp]	6.48	0.9507
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G074300 [exp]	6.92	0.9373	HCQL2
AT1G42960			unknown protein		Potri.005G254200 [exp]	8.24	0.9354
					Potri.005G073733 [exp]	8.48	0.9438

Compare expression of checked genes

Potri.005G246100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.