Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-FTSH2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42270 1077 / 0 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 1053 / 0 FTSH1 FTSH protease 1 (.1) AT2G30950 549 / 0 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 548 / 0 FTSH8 FTSH protease 8 (.1) AT5G15250 510 / 1e-172 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G26140 422 / 5e-138 FTSH4 FTSH protease 4 (.1) AT5G53170 416 / 1e-134 FTSH11 FTSH protease 11 (.1) AT2G29080 413 / 2e-133 FTSH3 FTSH protease 3 (.1) AT1G07510 404 / 7e-130 FTSH10 FTSH protease 10 (.1) AT5G58870 385 / 5e-123 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012000 [exp] 1204 / 0 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 528 / 3e-179 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 522 / 6e-177 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 506 / 5e-171 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.006G227700 [exp] 413 / 2e-134 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.015G020700 [exp] 413 / 1e-133 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.009G033600 [exp] 409 / 1e-131 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 404 / 4e-130 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.012G000700 [exp] 402 / 2e-129 AT5G53170 1076 / 0.0 FTSH protease 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016003 [exp] 1088 / 0 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10012277 [exp] 904 / 0 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 902 / 0 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10034572 [exp] 749 / 0 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 531 / 1e-180 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 532 / 1e-179 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001573 [exp] 423 / 3e-137 AT1G07510 1194 / 0.0 FTSH protease 10 (.1) Lus10016516 [exp] 418 / 5e-136 AT1G07510 1111 / 0.0 FTSH protease 10 (.1) Lus10018210 [exp] 413 / 2e-133 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10038819 [exp] 398 / 3e-128 AT5G53170 1064 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41
Representative CDS sequence Show only first row Show all	>Potri.005G249200.1 pacid=42804112 polypeptide=Potri.005G249200.1.p locus=Potri.005G249200 ID=Potri.005G249200.1.v4.1 annot-version=v4.1 ATGGCATCATCAACAAGAAACCCTCTACTCTCTTCAGACTTGTTTGGTTCCAAAGTCTTGCTTTCTCCTCCAACTCCTAAAACAACTAAATCCTCCTTCC TTTTGTCCAAGAATCTCCTAAAAATAGTAAATAAAAAGAAATCTGGTTCTTTTAAATCCCTTCAATCACAAGCAACCATAGCTGCTGCCTTACTCTTCTC TTCTTTAACCCCTCAAGCCCTAGCCATTGACAACCCAGCACCACCACCTACTCCTCCTCCGGTTATTGAAGCCCTTCCCACCAAACCATCTTCTCCTTTC GCTCAAAATCTTCTCGTTACAGCCCCTAAACCCCAGTCTGAGTCAACCTCTGACCTTCCTGAAGGTAGTCAATGGCGATACAGCGAATTTCTAAATGCAG TCAAGAAAGGGAAAGTGGAAAGAGTTCGTTTCAGCAAAGATGGTTCTACCCTCCAACTCAGCGCCGTAGATGGCCGTCGTGCCAGCGTTGTTGTCCTTAA TGACCCTGACTTGATTGACATTTTAGCAAGGAGCGGTGTTGATATTTCGGTTTCCGAGGGAGACTCAGGGAATGGGTTTTTTAATGTTATTGGAAGTCTT TTTTTTCCGATTCTTGCTGTTGCTGGATTATTTCTCTTGTTCCGACGGGTTCAAGGTGGGCCGGGTGGGCCCGGTGGGTTAGGTGGACCGATGGATTTTG GCAGGTCGAAATCGAAGTTTCAGGAAGTGCCGGAAACCGGTGTGTCGTTTGCTGATGTGGCCGGAGCTGATCAAGCTAAATTGGAGTTACAAGAGGTTGT TGATTTCTTGAAAAATCCTGATAAGTATACAGCTTTAGGAGCTAAAATTCCTAAAGGATGTTTGCTAGTTGGGTCGCCAGGGACTGGAAAGACATTGTTG GCTAGAGCTGTGGCAGGAGAGGCAGGGGTGCCGTTCTTTTCATGCGCAGCCTCGGAGTTTGTTGAGATGTTTGTTGGAGTTGGAGCGTCGAGAGTGAGAG ATTTGTTTGAGAAAGCCAAGTCGAAAGCACCCTGCATTGTGTTTATTGATGAGATTGATGCAGTTGGGAGGCAGAGAGGGGCTGGACTTGGAGGTGGGAA TGACGAGAGAGAGCAGACTATTAATCAGTTGTTGACCGAAATGGATGGATTTTCAGGCAATTCAGGTGTTATTGTATTGGCTGCTACGAATAGACCTGAT GTTCTTGATTCAGCTTTGTTGCGACCGGGAAGGTTTGATAGACAGGTTACAGTCGATAGGCCTGATATTGCTGGTAGAGTCAAGATTCTTCAGGTGCATT CTAGAGGAAAGGCACTTGCAAAGGATGTGGACTTTGAAAAGATTGCACGGAGGACCCCAGGATTTACTGGAGCTGATTTGCAGAACCTGATGAATGAAGC AGCCATTGTTGCAGCTAGGCGTGACCTTAAGGAAATAAGCAAGGATGAGATTTCTGATGCTCTGGAGAGGATAATTGCAGGACCGGAAAAGAAAAATGCT GTTGTCTCGGATGAAAAGAAAAGGCTAGTTGCCTATCACGAGGCTGGGCATGCCTTGGTTGGTGCACTTATGCCTGAGTATGATCCTGTAGCCAAGATAT CCATCATTCCCCGTGGTCAAGCTGGTGGTCTAACATTTTTTGCTCCAAGTGAGGAAAGGCTCGAGTCTGGATTGTACAGTAGAAGCTACCTGGAGAATCA GATGGCTGTTGCACTTGGTGGAAGGGTTGCCGAGGAAGTAATATTTGGTCAGGACAATGTCACTACAGGAGCATCCAGTGATTTCATGCAAGTTTCACGT GTGGCTAGGCAGATGGTAGAGAGATTTGGGTTCAGCAAAAAGATTGGACAGGTTGCCATCGGCGGATCTGGTGGAAATCCTTTCTTGGGACAACAGATGT CATCCCAGAAAGACTACTCCATGGCGACTGCTGATGTGGTGGATACAGAAGTAAGAGAGTTAGTGGAGACGGCTTATTCAAGAGCCAAGCAAATCATGAC AACTCACATTGACATCCTCCACAAGCTCGCGCAACTCCTCATAGAAAAAGAAACTGTCGACGGAGAAGAGTTCATGAGTCTCTTCATTGATGGAAAAGCT GAACTATATATTGCCTGA
AA sequence Show only first row Show all	>Potri.005G249200.1 pacid=42804112 polypeptide=Potri.005G249200.1.p locus=Potri.005G249200 ID=Potri.005G249200.1.v4.1 annot-version=v4.1 MASSTRNPLLSSDLFGSKVLLSPPTPKTTKSSFLLSKNLLKIVNKKKSGSFKSLQSQATIAAALLFSSLTPQALAIDNPAPPPTPPPVIEALPTKPSSPF AQNLLVTAPKPQSESTSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSTLQLSAVDGRRASVVVLNDPDLIDILARSGVDISVSEGDSGNGFFNVIGSL FFPILAVAGLFLLFRRVQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGSPGTGKTLL ARAVAGEAGVPFFSCAASEFVEMFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD VLDSALLRPGRFDRQVTVDRPDIAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAIVAARRDLKEISKDEISDALERIIAGPEKKNA VVSDEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQDNVTTGASSDFMQVSR VARQMVERFGFSKKIGQVAIGGSGGNPFLGQQMSSQKDYSMATADVVDTEVRELVETAYSRAKQIMTTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKA ELYIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.005G249200 [exp]	0	1	Pt-FTSH2.1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048900 [exp]	1.73	0.9352
AT5G38660		APE1	acclimation of photosynthesis ...		Potri.004G102100 [exp]	3.16	0.9433
AT1G74110		CYP78A10	"cytochrome P450, family 78, s...		Potri.001G054800 [exp]	4.00	0.9249
AT5G50100			Putative thiol-disulphide oxid...		Potri.015G072000 [exp]	5.29	0.9302
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158200 [exp]	7.74	0.9292	Elip1,Pt-ELIP2.2
AT1G52855			unknown protein		Potri.011G124800 [exp]	7.74	0.9300
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G152300 [exp]	7.93	0.9256
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158000 [exp]	12.40	0.9170	ELIP2.1,Elip4
AT5G40420		OLE2, PA23, OLE...	oleosin 2 (.1)		Potri.012G083400 [exp]	12.72	0.8961
					Potri.008G159600 [exp]	14.49	0.8602

Compare expression of checked genes

Potri.005G249200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.