Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50950 436 / 9e-140 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58400 189 / 8e-50 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 188 / 3e-49 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 180 / 2e-46 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G58390 172 / 5e-44 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 169 / 2e-43 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 169 / 3e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 167 / 1e-42 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59124 167 / 1e-42 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 165 / 8e-42 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092600 [exp] 828 / 0 AT3G50950 483 / 4e-158 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.011G129800 [exp] 641 / 0 AT3G50950 493 / 7e-163 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.005G119800 [exp] 494 / 3e-162 AT3G50950 1005 / 0.0 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.002G216800 [exp] 213 / 2e-57 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 213 / 5e-57 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 208 / 2e-55 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.018G138500 [exp] 201 / 1e-53 AT1G50180 617 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 192 / 1e-50 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 189 / 3e-49 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 200 / 4e-53 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 199 / 7e-53 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 199 / 8e-53 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 187 / 5e-49 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 186 / 2e-48 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 179 / 3e-46 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 179 / 5e-46 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 178 / 1e-45 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028279 [exp] 171 / 2e-43 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 171 / 2e-43 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.006G014400.1 pacid=42767970 polypeptide=Potri.006G014400.1.p locus=Potri.006G014400 ID=Potri.006G014400.1.v4.1 annot-version=v4.1 ATGGCAGTAGTAGTAGATGCTATGCTTCAAAGCCTGACACAACAAGTGTTCACAGCTCTGCAAGAACATGCTAGATTTGCACTTGACTTCAAAGATCAGT TTGAATTAATGAAGACCAGGCTAGACCTTACAAAGGCCCTGCTTGCTGACACAGAGAACCTCAAGGAAAAGAAGAAAGTTGTCAAGGCCATTTTGATTAG CTTGAGAGACCTAATTTACGAAGCTGACAACATAATGACAGATTGCCTTGTTAGAGATGAATATCAGAAAGAAGCATCCTGCACCAGTTTGACACTTAAG AAGCCACTGTTCTGGTATCAAACAGGCAAGAAGTTGAAGGACGTTAATGCAAAACTGGGGGAGATGGAGAAGTCACTAGGCGAGCATTTAAAATACCAGG ACCAGAGCGACCATGGAGATAACACAGCCCAGAGTATGAAATACACAGCACAGGACTATGTTCCGTCTGAGATAATTGGACTAGAAGAGGATCTGAAAAG GTTAAAAGGCTGGATTGGTGACACAAAAGATGAACTTCTCCTAGTCGGCATCGTCGGGATGGGAGGCTTGGGTAAAACCACCTTTGCCCAGAAAATTTTT AATGATCAACATGTAGCTGGTCGTTATGATAACATGATTTGGGTGTCGGTTTCTCAAGTTTCAAGTGACATGAGGATCATGAGGAGCATGCTGGAACAAT TAGAATCGCATTGCTCTGTGTCTGATGAAGCTCAAATGTTGCACAAACTCAATGAACTACTTAAAGGCAAGACATGCCTCATTGTTATGGATGATGTATG GAAAATTAATCAAGGATGGTGGAATCAATTTTTCTCAGGATTGCAGAGTGCAGTTGGAGAAAGCAGCTGCATCATAATCACAACTCGAAACGAAGAAGTC TTAACTAGCATGGGAGTTGACAAGTCACGGGTTCATCGGCCAAAATTGCTAACAGCCAATGATAGCTGGTTGCTGTTCAGCAAATCTGCGTTTTCCAGGT GCAGGGATAGAAAATGCCCAGATGCTCAATTCGAAAGAGTTGGTAAAGAACTCTTGGAGAAATGCGGGGGACTTCCACTGGCAATCAAGGCAATAGCAGC ACTTTTGGCTCCAAGATCAAATTCAGTTCGCCAATGGAATGAAATCAATGAAAATTTTCATGAACTGACTGCCGGAAGAAATTTTAACTCAGTGATGGCG TCTCTTCAACTGAGCTATGATGAACTTCCAATACATTTAAAACAATGTCTATTGTGTTTCTCCGTTTATCCTGAAGACTCCGAGATACAAGCAGAGCAAC TGGTCCATTGGTGGGTTGCAGAGGGGCTAATCCAGGGCAAGGGCTCAAAAACCGCAAAAGAATTGGGTTTTCGTTACCTCTCTGAACTAGTCACTAGGTG CTTGGTTGAAGCTGTGAATAGACGAGGATATGATGGAAGAGTCTACTGTTGCAAGATGCATGACATGGTGAGGGAACTGACCACTAGAATAGCAGAGGAA GAGTCATTTGGCAAATTTGATGAACAGGGCAAGCAGGAAATGACTGCAAATTCCCGTTGGTTGGGTTTTACAAGTGAAATGAACCCAGAACCATTGAAGA AAAGTTCAAAGCTCAGAGCCTTGCTGATAATGTCAACTAATGATCAAGTTGTGTTTGGTAGGCATTTTGGGTTGCTTGGTTCTCTCAGAGTGTTGGATTT CTCCCTGACTAAGTTGGAGAAGATTTCTACAGAGGAACTCGTGGAATGGATTTCCTCTCTTAAACGCTTGGCATATTTGAATCTAAGTGGTATTGTAGGC CTTAAAGAAGTACCATATTCGTTCAGAAAGCTCCGCAACCTTCAGTTTTTGGTTTTTGCTGGACGCAATGACCTAGGCAAAATAGATCAAATCACTTCTT TGAAAAAGTTGGTGGTCTTGGATTTAGGATCTTGTTTCCATTACCTACCTTCAGGAATAGAAAGGCTCTCCTATCTTCAAGAACTGTCTGGATTCAAAGT GGCATCCAGTAGCAGATCAGCAGCAAGTTGCAAGTTTTGTGATCTTGAAAAACTTGTCCACCTAAGAGTGCTGAGAATGAGTATCGGCAAGGACAGTGAA ATTACAGAAAATGAAAGGGAGGTACTCTTGAAGCTCAAGAAGCTTAAGGTACTAGCCATTGATGCCCAAGATTGTGAAGACAACATTATCTCTACGATGC TTAATATCCTTTCACCTCCTCCAAGTCTCCAAGAGTTGTATCTCAGGCGTTATCACCAAGGTACTCTTCCTACATGGATCAATCCTGAGAGGCTTTCTAA ATTGCAATACATTTGTATTGAGAATGGAGAAATCATTGACTTCCAAACAAGTCCTCTGTCTGTAGATGGAAGAGATTTTCCTTGGAACATTGAAGGTCTA TGTTTTAAGGTCCTGCGAAATTTAAAGCTGGACTGGAAAAACGTGGAAAAGGATATGCCTTCGTTACAATATGCAGAGGTTAGTGGTTGTCTGAATTTGA TAAATTTTCCACATCCTCTCGACAAGCTGGCTACATGGAGGAAGAGTGAAGATTGA
AA sequence Show only first row Show all	>Potri.006G014400.1 pacid=42767970 polypeptide=Potri.006G014400.1.p locus=Potri.006G014400 ID=Potri.006G014400.1.v4.1 annot-version=v4.1 MAVVVDAMLQSLTQQVFTALQEHARFALDFKDQFELMKTRLDLTKALLADTENLKEKKKVVKAILISLRDLIYEADNIMTDCLVRDEYQKEASCTSLTLK KPLFWYQTGKKLKDVNAKLGEMEKSLGEHLKYQDQSDHGDNTAQSMKYTAQDYVPSEIIGLEEDLKRLKGWIGDTKDELLLVGIVGMGGLGKTTFAQKIF NDQHVAGRYDNMIWVSVSQVSSDMRIMRSMLEQLESHCSVSDEAQMLHKLNELLKGKTCLIVMDDVWKINQGWWNQFFSGLQSAVGESSCIIITTRNEEV LTSMGVDKSRVHRPKLLTANDSWLLFSKSAFSRCRDRKCPDAQFERVGKELLEKCGGLPLAIKAIAALLAPRSNSVRQWNEINENFHELTAGRNFNSVMA SLQLSYDELPIHLKQCLLCFSVYPEDSEIQAEQLVHWWVAEGLIQGKGSKTAKELGFRYLSELVTRCLVEAVNRRGYDGRVYCCKMHDMVRELTTRIAEE ESFGKFDEQGKQEMTANSRWLGFTSEMNPEPLKKSSKLRALLIMSTNDQVVFGRHFGLLGSLRVLDFSLTKLEKISTEELVEWISSLKRLAYLNLSGIVG LKEVPYSFRKLRNLQFLVFAGRNDLGKIDQITSLKKLVVLDLGSCFHYLPSGIERLSYLQELSGFKVASSSRSAASCKFCDLEKLVHLRVLRMSIGKDSE ITENEREVLLKLKKLKVLAIDAQDCEDNIISTMLNILSPPPSLQELYLRRYHQGTLPTWINPERLSKLQYICIENGEIIDFQTSPLSVDGRDFPWNIEGL CFKVLRNLKLDWKNVEKDMPSLQYAEVSGCLNLINFPHPLDKLATWRKSED

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.006G014400 [exp]	0	1
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.014G150600 [exp]	3.00	0.8698
AT3G48480			Cysteine proteinases superfami...		Potri.010G180300 [exp]	3.87	0.8769
AT1G31830			Amino acid permease family pro...		Potri.003G103600 [exp]	4.24	0.8766
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	6.70	0.8645	LUG.1
AT5G18260			RING/U-box superfamily protein...		Potri.013G060900 [exp]	9.38	0.8645
AT1G72040			P-loop containing nucleoside t...		Potri.019G081600 [exp]	9.89	0.8567
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.014G060500 [exp]	12.40	0.8400
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	13.85	0.8631
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.001G189800 [exp]	15.49	0.8362
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.009G080200 [exp]	17.32	0.8175

Compare expression of checked genes

Potri.006G014400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.