Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GRAS52
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17230 641 / 0 GRAS SCL13 SCARECROW-like 13 (.1) AT1G50600 516 / 1e-178 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 504 / 2e-175 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 447 / 5e-154 GRAS SCL21 SCARECROW-like 21 (.1) AT1G21450 376 / 6e-124 GRAS SCL1 SCARECROW-like 1 (.1) AT1G66350 214 / 6e-63 GRAS RGL1 RGA-like 1 (.1) AT3G03450 215 / 8e-63 GRAS RGL2 RGA-like 2 (.1) AT1G14920 211 / 2e-61 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 201 / 3e-57 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G07530 203 / 7e-57 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G009700 [exp] 1031 / 0 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.014G164400 [exp] 637 / 0 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 565 / 0 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G409500 [exp] 446 / 2e-151 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 434 / 2e-146 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.005G186500 [exp] 387 / 2e-128 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 385 / 2e-127 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 250 / 8e-75 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G125200 [exp] 232 / 1e-68 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000539 [exp] 747 / 0 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 733 / 0 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10016596 [exp] 559 / 0 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 544 / 0 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 530 / 0 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 427 / 5e-144 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 411 / 1e-138 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 372 / 1e-126 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 370 / 1e-121 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 369 / 3e-121 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.006G016200.3 pacid=42769122 polypeptide=Potri.006G016200.3.p locus=Potri.006G016200 ID=Potri.006G016200.3.v4.1 annot-version=v4.1 ATGCAAACCTCTCAGAAACACCGATCAGCTGGCATCCATGGGTTTTACCACCAGCCAGTGCAAGAGATTGATCCATATGGTTTGTCTCATATCCAAATTT TAGACAAGACTCTGTATTCAGATGCTGGAAGCCAAGGAACCAGTGTTTCCTTTGAGACATGTCTAGGACAATTCTTCACCCTGGAATCATCCTCAGCGAC TGCTGGTTTCGTTGTCTATGATTCTCCTGCTGCCAGCATCTCATCCAACAGAAGCCCCTTTTCATCCCAGGGTTCACATTCATGCATTTCTGATCCTCGT CATTCCCCTGAAAATATGTATGGATCTCCTTTGAGTGGATCTTCCTCTGCTGATGACGGCAATATACTGAGGCAGAAATTGAGGGAGTTGGAAATTTCAT TGCTTGGGCCTGAATCTGATATTACTGACAGCGGCAGTTTTTGCTTTGTGAGTGGAGGATACCAAGCAGAACCATATGCAAGTTGGGACTGGAACCAAAT GATGGAAATGATCCCTAGGTTGGATCTTAAGCATGTGCTCCTTGCCTGCGCTGATGCAGTATCAAATGCTGATATACAAAGATCAGCAGGTCTAATGCAT GTTTTGGACCAAATGGTGTCAGTCTCTGGAGAGCCAATCCAGCGGTTGGGTGCTTATATGTTGGAAGGGCTTAGGGCAAGGTTGGAACTCTCAGGAAGTA AAATCTACAGAGCCTTGAAGTGTGAAGCACCAATCAGCTCAGATCTGATGACTTACATGGGCATTCTCTATCAGATATGCCCTTATTGGAAGTTTGCATA CACATCGGCTAATGTTGTCATTCGAGAAGCTGTAGAATACGAACCCAGAATTCATATCATCGACTTCCAGATTGCACAGGGAAGCCAGTGGATTCTTCTA ATGCAGATGCTTGCTTGCCGGCCAGGTGGACCCCCAGCAATTCATATAACTGGCGTTGATGATTCTCAATCAGCTGATGCTCGTGGTGGAGGACTTGATA TTGTGGGACAAAGGCTATCAAAAGTTGCCGAGTCCTGCAATGTGCCATTTGAGTTCCATGATGTTGCCATGGATGGTTGTGAGGTTCAACTGGAACATCT TAGGGTCCAACCTGGGGAAGCTGTGGTTGTGAATTTTCCGTACGTGTTGCACCACATGCCTGATGAGAGTGTGAACACATGGAATCACAGAGATAGATTG ATAAGGATGGTGAAGAGTTTGTCACCAAGGATCGTGACCCTCATCGAGCAAGAATCCAACACTAACACCAAACCATTCTTTCCAAGATTCATCGAGACAC TAGATTATTATGCAGCTATGTTTGAATCTATTGCCGCTGGTAGCTCTATGGACTTCAAGCAGAGGATTAATGCAGAGCAGCAGTGTGTGGCTCGAGACAT TGTCAATATGATCGCTTGTGAGGAAGCTGAGAGGGTTGAACGGCATGAACTTCTTGCGAAGTGGAGGTCTCGATTTACCATGGCAGGATTTAATCAGTAC CCACTGGGCTCTTCAGCGACTACTGCCGTTAAAGATTTGTTGAAGGAATACCACAGGGACTATAGTGTTCAGGAGAGAGACTGGGCTCTTTACCTTCGCT GGCGAGATAGAGACATGGCAACTTCTTCTGCCTGGCGGTGA
AA sequence Show only first row Show all	>Potri.006G016200.3 pacid=42769122 polypeptide=Potri.006G016200.3.p locus=Potri.006G016200 ID=Potri.006G016200.3.v4.1 annot-version=v4.1 MQTSQKHRSAGIHGFYHQPVQEIDPYGLSHIQILDKTLYSDAGSQGTSVSFETCLGQFFTLESSSATAGFVVYDSPAASISSNRSPFSSQGSHSCISDPR HSPENMYGSPLSGSSSADDGNILRQKLRELEISLLGPESDITDSGSFCFVSGGYQAEPYASWDWNQMMEMIPRLDLKHVLLACADAVSNADIQRSAGLMH VLDQMVSVSGEPIQRLGAYMLEGLRARLELSGSKIYRALKCEAPISSDLMTYMGILYQICPYWKFAYTSANVVIREAVEYEPRIHIIDFQIAQGSQWILL MQMLACRPGGPPAIHITGVDDSQSADARGGGLDIVGQRLSKVAESCNVPFEFHDVAMDGCEVQLEHLRVQPGEAVVVNFPYVLHHMPDESVNTWNHRDRL IRMVKSLSPRIVTLIEQESNTNTKPFFPRFIETLDYYAAMFESIAAGSSMDFKQRINAEQQCVARDIVNMIACEEAERVERHELLAKWRSRFTMAGFNQY PLGSSATTAVKDLLKEYHRDYSVQERDWALYLRWRDRDMATSSAWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.006G016200 [exp]	0	1	GRAS52
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.001G136200 [exp]	3.60	0.7796
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.012G134100 [exp]	4.69	0.8271
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Potri.001G235800 [exp]	9.05	0.8247
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.001G110700 [exp]	11.48	0.7879	DREB69,Pt-DREB1.6
AT4G20880			ethylene-responsive nuclear pr...		Potri.001G464300 [exp]	12.68	0.7959
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Potri.012G007500 [exp]	12.72	0.7663
AT4G17490	AP2_ERF	ERF-6-6, ATERF6	ethylene responsive element bi...		Potri.001G154200 [exp]	13.41	0.7907	Pt-ERF5.2,ERF4
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	18.33	0.7723
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.017G045400 [exp]	20.97	0.7306
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Potri.007G048101 [exp]	21.54	0.7908

Compare expression of checked genes

Potri.006G016200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.