Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16420 639 / 0 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT3G07740 464 / 1e-158 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT1G21700 63 / 5e-10 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT4G34430 62 / 8e-10 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT2G33610 45 / 0.0002 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT1G79000 44 / 0.0004 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007600 [exp] 969 / 0 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 619 / 0 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.004G135400 [exp] 137 / 9e-38 AT4G16420 102 / 9e-26 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.005G180800 [exp] 61 / 1e-09 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.002G080600 [exp] 61 / 2e-09 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 60 / 5e-09 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 56 / 5e-08 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017553 [exp] 771 / 0 AT3G07740 625 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10000540 [exp] 742 / 0 AT3G07740 499 / 2e-174 homolog of yeast ADA2 2A (.1.2.3.4) Lus10006383 [exp] 566 / 0 AT3G07740 581 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10023583 [exp] 82 / 5e-16 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10040472 [exp] 79 / 7e-15 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 71 / 1e-12 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 70 / 4e-12 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10029695 [exp] 52 / 1e-06 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042734 [exp] 52 / 2e-06 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10025165 [exp] 46 / 0.0001 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0006 [poplar] [flax] C1 PF00569 [poplar] [flax] ZZ Zinc finger, ZZ type
Representative CDS sequence Show only first row Show all	>Potri.006G017300.3 pacid=42769556 polypeptide=Potri.006G017300.3.p locus=Potri.006G017300 ID=Potri.006G017300.3.v4.1 annot-version=v4.1 ATGGGTCGTTCTCGAGGGAATTTTCACTCTAATGATGAAGACCCTACTCAGAGATCAAGAAGGAAGAAGAATGCGGCAAGTGGAGATAATTCCGAATCTT TATTGGCTGGCCAAGGAAGTGGTGATGGGAAAAGGGCATTATACCATTGCAATTATTGCAATAAAGATATAACAGGGAAGACCCGTATCAAATGCGCTAT GTGCCCTGATTTTGACCTATGCTTAGAGTGCTTCTCTGTAGGAGCTGAGGTTACACCTCATAAAAGCAATCACCCTTACAGGGTTATGGATAATTTATCT TTCCCGCTTATTTGCCCTGATTGGAATGCAGATGAAGAAATACTGCTTCTAGAGGGAATTGAAATGTATGGATTGGGGAACTGGGCAGAAATTGCTGAGC ACGTGGGGACAAAGAGTAAAGACACATGTATTGAACACTATAATAGTGTTTACATGCAATCCCAGTACTTCCCTCTCCCGGACATGTCGCTTGTTGTTGG GAAAAATAGAAAGGAACTTCTTGCTATGGCCAAGGGATATAGTGAGGACAAAAAAGGTGCTGCTATGCTTGGGGATCTTACTTTGAAGGAAGAATCTCCA TTTTCTCCTTCAAGAGTGAAAGTCGAAGAAATGCATAAAGGAGGTTCCTCTGGCCGATTATCAACATTAAACTCAGAGGTAGAATCTGCTGGCCGTCCTA CTACCACAAACTCTGCAGCAACAGCTGCTAATAAGAAGGCATCTAGCATTGCTCGGGTTAAAGATGGACCTAATGTTGTTAAAGTGGAAGATCCTCAGGT GGACCGAAATGCTAAAGGGAAGAAACCGAATTCCTCTGGGAGTGAGGGTCCATCTTTAATGGAGTTGAGCGGTTATAACCCCAAGAGGCAGGAGTTTGAT CCCGAATATGATAATGATGCTGAGCAGTTGCTAGCTGAGATGGAATTTAAAGATACTGACACTGAGGAAGAGCGGGAGCTGAAATTGCGAGTGCTGCATA TATATTCAAAGCGGCTCGACGAGAGAAAGCGCAGAAAAGATTTCATACTAGAAAGAAATCTGCTGCAACCAAGTCCTTTTGAAAAGGACTTGACTCCAGA AGAGAGGGCATTATGTCGGCGTTATGACCCTTTCATGCGTTTTCATTCCAAGGAAGAGCATGAGGAATTGCTTCAGGTTGTTATCGAAGAGCATCGGATG CTGAAAAGGATCGAAGAGCTGAAGGAAGCTCAAGCAGCTGGTTGCCGCACAGCAGCTGAGGCGGACAGGTACCTTGAGCAGAAGAGGAAAAAAGAAGCCG AGGAAAATTCCAGTAGACTGAAAGACAATGCTCTGGTTGGTCCTAGCAACCATGGTGCTCCCAATGCATTTATTCCGTCAGAGTCTGTTAGGAAGGATTC GAGTACTAGACCTGTAGGACAGGGCTCTGCTAGCTATGCCAATGGTTTGGACACAACAGGCTTTTATGAAACGCAGCTACTATCTGAAACTGAAAAACGG CTATGCCGTGAGATTCACCTACCTCCTCCTGTCTACCTCAAGATGCAAGAGGTCATGACCAAAGAGATCTTCAGCGGTAACATCACTAAGAAATTGGATG CTCACCCCTTGTTCAAGATTGAAGCAAGCAAAGTTGATAGGGTGTATGATATACTTGTGAAGAAGGGGATTGCTCAACCTTGA
AA sequence Show only first row Show all	>Potri.006G017300.3 pacid=42769556 polypeptide=Potri.006G017300.3.p locus=Potri.006G017300 ID=Potri.006G017300.3.v4.1 annot-version=v4.1 MGRSRGNFHSNDEDPTQRSRRKKNAASGDNSESLLAGQGSGDGKRALYHCNYCNKDITGKTRIKCAMCPDFDLCLECFSVGAEVTPHKSNHPYRVMDNLS FPLICPDWNADEEILLLEGIEMYGLGNWAEIAEHVGTKSKDTCIEHYNSVYMQSQYFPLPDMSLVVGKNRKELLAMAKGYSEDKKGAAMLGDLTLKEESP FSPSRVKVEEMHKGGSSGRLSTLNSEVESAGRPTTTNSAATAANKKASSIARVKDGPNVVKVEDPQVDRNAKGKKPNSSGSEGPSLMELSGYNPKRQEFD PEYDNDAEQLLAEMEFKDTDTEEERELKLRVLHIYSKRLDERKRRKDFILERNLLQPSPFEKDLTPEERALCRRYDPFMRFHSKEEHEELLQVVIEEHRM LKRIEELKEAQAAGCRTAAEADRYLEQKRKKEAEENSSRLKDNALVGPSNHGAPNAFIPSESVRKDSSTRPVGQGSASYANGLDTTGFYETQLLSETEKR LCREIHLPPPVYLKMQEVMTKEIFSGNITKKLDAHPLFKIEASKVDRVYDILVKKGIAQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16420		PRZ1, ADA2B	PROPORZ1, homolog of yeast ADA...		Potri.006G017300 [exp]	0	1
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Potri.001G317200 [exp]	7.41	0.8243
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.018G146001 [exp]	15.62	0.8151
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Potri.001G341900 [exp]	21.90	0.7925
AT1G13040			Pentatricopeptide repeat (PPR-...		Potri.008G185000 [exp]	37.22	0.7808
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	40.59	0.7535
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.014G179300 [exp]	43.68	0.7611
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	47.07	0.7785
AT2G18220			Noc2p family (.1)		Potri.003G213601 [exp]	50.39	0.7739
AT5G15270			RNA-binding KH domain-containi...		Potri.017G114400 [exp]	60.85	0.7431
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	64.69	0.7575

Compare expression of checked genes

Potri.006G017300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.