Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41920 509 / 2e-180 GRAS GRAS family transcription factor (.1) AT3G54220 451 / 1e-153 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT3G03450 196 / 2e-56 GRAS RGL2 RGA-like 2 (.1) AT1G63100 196 / 6e-56 GRAS GRAS family transcription factor (.1) AT2G01570 186 / 1e-52 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G66350 181 / 2e-51 GRAS RGL1 RGA-like 1 (.1) AT1G14920 177 / 6e-50 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 177 / 8e-50 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G55580 164 / 1e-45 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G66770 162 / 6e-44 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G018900 [exp] 726 / 0 AT5G41920 506 / 5e-179 GRAS family transcription factor (.1) Potri.016G143833 [exp] 444 / 5e-149 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G114200 [exp] 442 / 5e-148 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.002G036100 [exp] 351 / 1e-116 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G226800 [exp] 344 / 9e-114 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.001G326000 [exp] 254 / 2e-77 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.001G109400 [exp] 216 / 3e-63 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.003G122400 [exp] 211 / 2e-61 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.010G110700 [exp] 191 / 2e-54 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010462 [exp] 399 / 4e-136 AT5G41920 327 / 2e-108 GRAS family transcription factor (.1) Lus10016496 [exp] 395 / 3e-131 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 392 / 5e-130 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10003540 [exp] 340 / 8e-112 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 337 / 6e-111 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10041540 [exp] 260 / 2e-79 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 261 / 3e-79 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10006322 [exp] 205 / 4e-60 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 203 / 3e-58 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10022418 [exp] 185 / 1e-53 AT1G50420 592 / 0.0 scarecrow-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.006G021400.1 pacid=42770540 polypeptide=Potri.006G021400.1.p locus=Potri.006G021400 ID=Potri.006G021400.1.v4.1 annot-version=v4.1 ATGCTTCAAAGCTTAATTCCTCAATCCCCTATCAATTCCACAAACCCCAACAATTCTTCTTCCTCCCCCATGAAATCCAAGCGTGCCGCCGCGGACCTCA CTGTCGGCGAGTCCTCCGGTGATGACCCTTCATCCAAACGGGTCAGTTATGAAAATCCCACCACGGAAATCGTCTCCTCAACCAATTTAGTCGAAGGCGG AGGAGGAGACGACGGGGGTGAGTCTAGTGGGCTCAGGTTGCTTGGGCTCTTGCTGCAATGTGCGGAGTGTGTTGCGATGGATAATCTAAATGGCGCGACG GACTTGTTGCCTGAGATTGCGGAGCTGTCGACGCCGTTTGGATCTTCGCCGGAGAGAGTGGGAGCGTACTTTGCACATGCTTTGCAGGTGCGGGTGGTTA GTTCTATCCTCGGTACTTACTCACCACTCGTGTCAAAATCAGTAACGCGAACTCAGTCACAGAAATTATTCAATGCTTTGCAGTCATACAATTCAATCAG TCCTCTGGTCAAATTCTCTCATTTCACAGCTAATCAAGCGATTTTCCAAGCATTGGACGGCGAAGATCGTGTCCACGTCATCGATTTGGATATAATGCAA GGACTTCAATGGCCAGGGTTGTTTCATATCTTAGCTTCCAGGCCTAGAAAGATCCGGTCCATGAGAATTACCGGGTTTGGATCCTCATCCGAGTTGCTCG AGTCAACCGGGAGGCGACTCGCAGATTTCGCCAGTTCACTCGGGCTCCCGTTTGAGTTTCACCCCTTAGAGGGTAAAATTGGGAATGTGACAGGTTTGAG TCAACTCGGGGTGAGGCCGAGAGAGGCTATTGTAGTACATTGGATGCATCATTGTTTGTATGATGTAACTGGGAGTGATCTAGAGACGTTGAAATTGTTG GCTTTGTTAAGGCCGAAATTGATCACGACCGTTGAACAAGATTTAAGTCATGGGGGGAGTTTTTTAGGGAGGTTTGTTGAGGCATTGCATTATTATAGTG CCTTGTTTGATGCTCTTGGGGACGGATTGGGTGTGGATAGTGTAGAGAGGCATATGGTGGAGCAGCAACTGTTTGGGTGTGAGATAAGGAATATTGTTGC TGTCGGCGGTCCTAAGAGGACCGGTGAGGTTAAGGTTGAGAGATGGGGTGACGAGCTGAGACGGTCTGGGTTTCGACCCGTTTCGCTCCAGGGTAACCCG GCCGCTCAAGCTGGTTTGTTGCTCGGGATGTTTCCATGGAGAGGGTATACTTTGGTTGAAGAAAATGGGTGCTTGAAATTGGGGTGGAAGGATTTGTCCT TGTTGACCGCCTCTGCGTGGCAACCGTCAGATTGA
AA sequence Show only first row Show all	>Potri.006G021400.1 pacid=42770540 polypeptide=Potri.006G021400.1.p locus=Potri.006G021400 ID=Potri.006G021400.1.v4.1 annot-version=v4.1 MLQSLIPQSPINSTNPNNSSSSPMKSKRAAADLTVGESSGDDPSSKRVSYENPTTEIVSSTNLVEGGGGDDGGESSGLRLLGLLLQCAECVAMDNLNGAT DLLPEIAELSTPFGSSPERVGAYFAHALQVRVVSSILGTYSPLVSKSVTRTQSQKLFNALQSYNSISPLVKFSHFTANQAIFQALDGEDRVHVIDLDIMQ GLQWPGLFHILASRPRKIRSMRITGFGSSSELLESTGRRLADFASSLGLPFEFHPLEGKIGNVTGLSQLGVRPREAIVVHWMHHCLYDVTGSDLETLKLL ALLRPKLITTVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGVDSVERHMVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGDELRRSGFRPVSLQGNP AAQAGLLLGMFPWRGYTLVEENGCLKLGWKDLSLLTASAWQPSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41920	GRAS		GRAS family transcription fact...		Potri.006G021400 [exp]	0	1
AT2G16980			Major facilitator superfamily ...		Potri.005G245900 [exp]	6.92	0.7640
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.005G051700 [exp]	11.04	0.7961
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.007G026800 [exp]	22.49	0.7020
AT5G23850			Arabidopsis thaliana protein o...		Potri.003G125000 [exp]	23.23	0.7213
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.006G199500 [exp]	23.32	0.7120
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	27.11	0.7626
AT1G15290			Tetratricopeptide repeat (TPR)...		Potri.003G031000 [exp]	29.39	0.7105
AT4G16750	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G079300 [exp]	35.11	0.7230
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Potri.005G149800 [exp]	35.24	0.7004
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411300 [exp]	48.43	0.6715

Compare expression of checked genes

Potri.006G021400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.