Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CIP111.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56690 1080 / 0 CIP111 Cam interacting protein 111 (.1) AT3G53230 265 / 5e-75 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 264 / 7e-75 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 253 / 5e-71 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT2G03670 248 / 1e-70 CDC48B cell division cycle 48B (.1) AT3G01610 224 / 5e-61 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT1G03000 224 / 2e-60 PEX6 peroxin 6 (.1) AT5G08470 220 / 1e-58 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G53750 203 / 8e-57 RPT1A regulatory particle triple-A 1A (.1) AT3G05530 200 / 7e-56 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G108200 [exp] 268 / 2e-76 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 268 / 5e-76 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 267 / 8e-76 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 266 / 1e-75 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 266 / 2e-75 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.001G128700 [exp] 256 / 2e-73 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.013G151600 [exp] 223 / 1e-60 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G174100 [exp] 219 / 3e-58 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.001G161700 [exp] 204 / 4e-57 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020255 [exp] 1169 / 0 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1) Lus10002639 [exp] 1090 / 0 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10037385 [exp] 271 / 4e-77 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 264 / 5e-75 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10042029 [exp] 262 / 7e-75 AT2G03670 826 / 0.0 cell division cycle 48B (.1) Lus10021441 [exp] 261 / 1e-73 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10018033 [exp] 252 / 6e-72 AT2G03670 813 / 0.0 cell division cycle 48B (.1) Lus10016123 [exp] 253 / 1e-70 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 253 / 1e-70 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 251 / 4e-70 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Potri.006G035000.1 pacid=42767116 polypeptide=Potri.006G035000.1.p locus=Potri.006G035000 ID=Potri.006G035000.1.v4.1 annot-version=v4.1 ATGCCATCAAAGACAAAGAAGAATTCAAAGACACCATCGAGGCTGTCAAATTCTGACCAGTCTGCTTCATCTCCTAGAACACCATCATTGGCATCTAGTA TAGACTTAGAAGCTAGTCAACAAGAAAATATTGCGTTGTGTTTAGAAGAAGCATCGAGTAAATATCCGTATTTGATTGATAAATCTGCTTTCATTGGTCG AATCACTGATGTTGAGGCGGAGTCTAGTACAACTGCAAGAGGTTGTAAGATTTGGCTTTCAGAATCTTCTATGGTTTCTTCTTCTCTTGCCCCTGGTTCC ATTGTATCGGTGTCACTTGCTGCTGTGGAGAGGAGATTTTCGAGTAGTAGTTTTCCTCTCAGTTCGTTTTCCTATGAATGGTCTAGACAATGTGAAGTGG AATCTGTGGATAAAATAACTAATGAAGCTGGGAATTACTTTGCTCTTGCGACGGTTTTTCCTTCTTGTAAGGTTTCCAAGAATGGAGCCCGGTTGTCATC AAACCTTGCCTATATGATGGGATGCCCTGCTTCAGGCAAGGTTGTATTTGTTCACACTATTAGAAATAAACTCCTAACTGATATTGTAAATGGGAATGAT ACGCCAGAAGGTGCAAATGCTGATGATCTTTCACTTCATAACTGCAATGAATTGTATCTGGAGCTAGTTCCTTTTATGGACAGAGTAAAAATGAAGAGTG ATACTATGTCTGCAATGAAATTATCTGCAGAAAAAAGACATGACAGATCTGAAAATGGCATGATTTCATCCCCGAAGACACCGTTGTGTCAGCCAAAGCT TAGCTCTCCTAGTCCCATTCACTTAACTTCACCGATATGTGAAGAAGCAGCATCCAATATATCCAATTCAAATGGCACAGATGTTGGTTTGCTGAATATC AAAGAGGTATTAGAGGATGAAAGTGCCAAGAAACTTCTACAGGTCTGTGCTACGTCATGGTTGTATTCTCGTGTTCTAATATGTGGAAATCTTGTGGCCA TCCCAGTGCTTTCAAATCTTTGCATTTTCCGTGTCAAAAGTGCAAATAAATTACCTGCAGATGGTAGTGATCAAGATTTGATGAAAGATAGAACTCATGG GATGCAGCCTCAAGATTCTGAAGAATTGAGCCATATGAAAGATGCTTTTTCCATAAACCGTGAGACAAAAGTATATTTACATCAACATATGAACTCAACG GCTGAAAGGCCACAAAAACAAGGTTTGCCATTAATGCAAAGTGAATGTATTAATGGTAAAACAATTATAGGAAATGAGAGATCAAAATTGGGTGGTCTAC ATAAGGAATATACAGTTTTGAAGGACATAATTGTATCATCCACGAAGAACACTTTGTCATGTTTTGGCTTACGAACTACAAAGGGAGTGCTTCTTCACGG CCCACCTGGAACTGGAAAGACTTCTTTGGCTCGATTATGTGTCATTGATGCTGGTGTCAACCTTTTCTCAGTAAACGGACCTGAGATATTTAGTCAGTAT TATGGAGAAAGTGAACAAGCAATGCATAAAGTTTTTGATTCAGCCTGTCAATCTGCACCTGCCGTGGTGTTCATTGATGAGTTGGATGCAATTGCACCTG CACGGAAAGATGGAGGTGAAGAACTATCTCAAAGAATGGTAGCTACATTATTGAATTTGATGGATGGGATTGCTAGGACTGATGGACTGCTTGTTATTGC TGCTACAAACAGGCCTGATAGTATCGAGCCTGCACTGAGGCGGCCTGGAAGACTTGACAGAGAAATTGAAATAGGTGTGCCTTCTCCCAGCCAACGATTG GACATACTTCATACTCTTCTAAGTGAAATGGAGCACTCAGTTTCAGATATGCAACTTAAACAACTTGCCATGGCTACTCATGGTTTTGTGGGTGCTGATT TAGCAGCCCTCTGTAATGAGGCAGCTTTGGTTTGTCTCAAGCGTCATGCTAGATCCAAAAAATCTGATTATAGTTCTCGTTCCAAGGGATCATCTATTGC ATATGAAGGCCATTCTGACAGCATGGTGAAAGGATCTGATTGCTCAACAGGGGCAAGAGATATGTTGAGGGATGGTGCAGATTCTGCATCTTCAAGCACC TCACATTTGCCTGTTTCCTTGGAGAACCTGTCATCTTCTTGCTCGGACGGAGATGTCTCAGAGATCACAGATAATACAGAGAAAGGAATTATTGCTTGTC CTAGAGAGGAATTTTTGGTGGAAGAAGAAGCCTTGTTGAACATTGTTTCTGAAGATTTTGAAATGGCCAGGATGAAAGTGAGGCCTAGTGCCATGAGAGA GGTAATCCTTGAGGTTCCAAAAGTTAATTGGGAAGATGTGGGCGGCCAGGGGGAAATAAAAACCCAATTAATGGAAGCAGTGCTATGGCCTCAAACACAC CAGGATGCATTCAAGCGCATTGGTACCCGTCCCCCAACGGGGATATTGATGTTTGGTCCCCCTGGTTGTAGCAAAACTCTTATGGCCCGTGCAGTGGCTT CTAAAGCAGGATTGAATTTCCTTGCAGTGAAGGGTCCAGAACTTTTTAGCAAATGGGTTGGTGAATCCGAGAAGGCTGTAAGATCCCTCTTTGCAAAGGC AAGGGCAAATGCTCCATCAATTATATTCTTTGATGAAATTGATGGCCTTGCTGTTATTCGTGGGAAGGAAAGTGATGGGGTTTCGGTTTCAGATAGGGTT ATGAGTCAACTCCTTATTGAATTGGATGGCTTGCAACAAAGAGTTAATGTTACTGTAATTGCTGCTACAAATCGGCCAGACAAGATTGATCCTGCCCTTT TGAGACCAGGGCGCTTTGATCGACTGTTGTACGTGGGACCTCCAAATCAGAATGACAGGGAAGACATATTTCGTATCCATTTGCACAAAGTTCCATGCAG TTCTGATGTCAATATAAAAGAACTAGCTTGTCTCACTGATGGGTGCACTGGAGCTGATATAGCATTAATCTGCCGGGAGGCAGCTGTTGCAGCCATTGAG GAGAATATTGATGCTTCGGAAGTACCCATGCAACATTTAAAGACTGCAATTCAACAAGTCCAGCCAACGGAGATCAATTCTTATCAAGATCTATCAGCAA AATTTCAGAGGCTCGTTCACTCCAGTGACAAAGATGAATTGGGAAACCAAGAGTGCTCGAGCAGGGCAAACTCGTTTTCCATCAGGACCATAATAAAATC CGCGATGCAGTTCTTGAATCGTTCCTCTGCCTCAGGCTCTGGGCAATAG
AA sequence Show only first row Show all	>Potri.006G035000.1 pacid=42767116 polypeptide=Potri.006G035000.1.p locus=Potri.006G035000 ID=Potri.006G035000.1.v4.1 annot-version=v4.1 MPSKTKKNSKTPSRLSNSDQSASSPRTPSLASSIDLEASQQENIALCLEEASSKYPYLIDKSAFIGRITDVEAESSTTARGCKIWLSESSMVSSSLAPGS IVSVSLAAVERRFSSSSFPLSSFSYEWSRQCEVESVDKITNEAGNYFALATVFPSCKVSKNGARLSSNLAYMMGCPASGKVVFVHTIRNKLLTDIVNGND TPEGANADDLSLHNCNELYLELVPFMDRVKMKSDTMSAMKLSAEKRHDRSENGMISSPKTPLCQPKLSSPSPIHLTSPICEEAASNISNSNGTDVGLLNI KEVLEDESAKKLLQVCATSWLYSRVLICGNLVAIPVLSNLCIFRVKSANKLPADGSDQDLMKDRTHGMQPQDSEELSHMKDAFSINRETKVYLHQHMNST AERPQKQGLPLMQSECINGKTIIGNERSKLGGLHKEYTVLKDIIVSSTKNTLSCFGLRTTKGVLLHGPPGTGKTSLARLCVIDAGVNLFSVNGPEIFSQY YGESEQAMHKVFDSACQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGIARTDGLLVIAATNRPDSIEPALRRPGRLDREIEIGVPSPSQRL DILHTLLSEMEHSVSDMQLKQLAMATHGFVGADLAALCNEAALVCLKRHARSKKSDYSSRSKGSSIAYEGHSDSMVKGSDCSTGARDMLRDGADSASSST SHLPVSLENLSSSCSDGDVSEITDNTEKGIIACPREEFLVEEEALLNIVSEDFEMARMKVRPSAMREVILEVPKVNWEDVGGQGEIKTQLMEAVLWPQTH QDAFKRIGTRPPTGILMFGPPGCSKTLMARAVASKAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRV MSQLLIELDGLQQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNQNDREDIFRIHLHKVPCSSDVNIKELACLTDGCTGADIALICREAAVAAIE ENIDASEVPMQHLKTAIQQVQPTEINSYQDLSAKFQRLVHSSDKDELGNQECSSRANSFSIRTIIKSAMQFLNRSSASGSGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.006G035000 [exp]	0	1	Pt-CIP111.1
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Potri.010G098400 [exp]	1.00	0.8775
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	2.82	0.8490
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	5.09	0.8727
AT5G09840			Putative endonuclease or glyco...		Potri.019G004000 [exp]	5.74	0.8534
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	6.00	0.8314
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	7.41	0.8095
AT2G31340		EMB1381	embryo defective 1381 (.1)		Potri.002G224300 [exp]	7.41	0.8416
AT1G10490			Domain of unknown function (DU...		Potri.005G085600 [exp]	10.95	0.8056
AT1G80810			Tudor/PWWP/MBT superfamily pro...		Potri.003G181300 [exp]	16.43	0.7348
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G215500 [exp]	20.19	0.7868

Compare expression of checked genes

Potri.006G035000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.