Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68030 105 / 8e-25 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14770 93 / 7e-20 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G01150 76 / 1e-14 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT5G03780 72 / 5e-13 TRFL10 TRF-like 10 (.1) AT4G12670 68 / 9e-12 Homeodomain-like superfamily protein (.1) AT5G58340 54 / 2e-07 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G17520 49 / 5e-06 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G17460 48 / 2e-05 MYB TRFL3 TRF-like 3 (.1.2) AT1G72740 47 / 2e-05 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G72650 47 / 5e-05 MYB TRFL6 TRF-like 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053300 [exp] 558 / 0 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G005600 [exp] 73 / 2e-13 AT5G03780 94 / 1e-20 TRF-like 10 (.1) Potri.013G154500 [exp] 54 / 2e-07 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G147400 [exp] 52 / 6e-07 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.018G066300 [exp] 50 / 3e-06 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.009G087000 [exp] 47 / 1e-05 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.001G292700 [exp] 46 / 5e-05 AT1G49950 273 / 2e-91 telomere repeat binding factor 1 (.1.2.3) Potri.001G170200 [exp] 44 / 0.0003 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.003G063700 [exp] 44 / 0.0003 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012209 [exp] 157 / 1e-40 AT1G68030 97 / 5e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10011320 [exp] 140 / 7e-35 AT1G68030 84 / 2e-17 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10042361 [exp] 94 / 2e-22 AT1G01150 63 / 2e-12 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10026308 [exp] 93 / 3e-20 AT1G01150 63 / 6e-11 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024200 [exp] 64 / 2e-10 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10020771 [exp] 58 / 2e-08 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10042209 [exp] 56 / 5e-08 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10017319 [exp] 54 / 2e-07 AT5G58340 66 / 2e-11 myb-like HTH transcriptional regulator family protein (.1.2) Lus10017320 [exp] 54 / 2e-07 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2) Lus10027621 [exp] 53 / 2e-07 AT1G72740 107 / 1e-27 Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G054401.3 pacid=42769244 polypeptide=Potri.006G054401.3.p locus=Potri.006G054401 ID=Potri.006G054401.3.v4.1 annot-version=v4.1 ATGTTGAAAAAACAGGCTTGGATGGATGACCCTTCTAGCTCGGCTACGACACTTGCGTGGCATTGGGTAATTGAGTATCTGGCAAGTTTTCCTGAAATAG AGGCCTCGATTTTACACGATTTGATTGAGGCGGCTCCGAAAATACCTGAAGATTTGAGGAAAAACACTAGGGAAATAGTTGCTTTGAGATGCTTAGAGGA TTTTTTTTGTCATAATAATGGAATCACGAATGATGTTCCTTCTAAAGAACCCAAAGTCACATTTGATTTGTCAGAGAGTTCTGAAGATGTACTTCAATCA ATATTGCAAGAGACATCGGTATCAGATCTGAAAAGGGCTGGACCGGGGCGATTGAAATGGGATACTCACCCTTTCATTATGCATAAAAGAGCTTTTATGC CTAAATGCGCTTTAGAAAAGGTGAAGGATGCAATCCTTGAGGGTATTCATCCATATGCCTCATTGAAGGAATATAGTGGACTGGTGGATGCAAATGATGG GGACCTTGGTGCACCCGCATGGAGGATTGATGGGAGTGGTACTGATGGACAAATTAATGCTCCTGAAGAAAATTCCATTCCTTTAAGAGGGATAGAAGTG GAAGATGATTCATGTAACAGGAACTCATTACACTTTAAGAGGGATAGAAGTGGTTCGGCTAATGAAAATCTGGCTGGAGACCTTGAAGACCAAAATTGTG TTGATGATGGTGATCATCTTCATCCACAAGCCAAGAGGTTCAAGCAAGATGCCTTTTGTGACTACCAGTCTTTGGAACACATTTCAACTCTTCAACAGCA CATGGAAATGGTAGAGGATTCAATTCAAAGAGTGACTGGGGATTCTGAAAACAAAGATTGTCACATGGAAGAAAAAACTTCACAAGGTGGATTGGAAGAA AGCAGGTCTGTAGAGAATGGTCATGATGAATGTGTTGGTATGGATAGGCATGGGAAGAGTCTTGATCCTGATAATGCATTCCAGCATAATCAGCACGAGA TTGCTCACAATGCCAACAAAATACCACAAGATATATCTGGGAATGGACTCCACCTGTATAGCTTAGTGGATGAAATCAACTGTGCTAAACCTAGAATATC AAACACTGCACCATCTGTAGGAACCCCAAATAAATTCTTTGTTAATGAAAACAAAGATAACTCTGATCATAGTGGTCAACTAAAACCATCAAATTCTTTA TGCCACCCTGATGCAACTGTTAGGACTAATCATATATCTAATGGAGAAAAGGTGGGGGAGGAGATGGTTCGAAAGAACCCTTCTGGAACTGGACTTGACA GAAACCAACATGAAGTTTGTGTTGATCCTATTGACAGCGATGTTGATCAGTCGTGTAAAGAAAAAGATGTTTTCTCTGGAAGCCAGAGTAAAGATGGACA AAGACAGAAAGCTGTTTGTGCCACCAACATCGACGGAGGAGAAACCTCTGATGATGAAAATGACAAGTCATCAACTTCTAATTACTTCATACAATTCCGA AACATAGAGAAACAATGTTCATACCCTGCAATGCCTCAGTTGAGGCGGAAAAAGGTTCCATGGACAGTTCAGGAGGAGGAGATGCTCAAGGAGGGAGTGC AGAAATTTTCAAGCGACGGAAAATTTCCATGGAAGGACATTTTGGAGTATGGTAGTTCTGTGTTTTTGAGTGGCCGTACAACAATAGACCTTAAGGATAA ATGGAGGAACATGTGCAAAAGCATAGGTAGCTACAGTTACTTAAGTAGTACTTGA
AA sequence Show only first row Show all	>Potri.006G054401.3 pacid=42769244 polypeptide=Potri.006G054401.3.p locus=Potri.006G054401 ID=Potri.006G054401.3.v4.1 annot-version=v4.1 MLKKQAWMDDPSSSATTLAWHWVIEYLASFPEIEASILHDLIEAAPKIPEDLRKNTREIVALRCLEDFFCHNNGITNDVPSKEPKVTFDLSESSEDVLQS ILQETSVSDLKRAGPGRLKWDTHPFIMHKRAFMPKCALEKVKDAILEGIHPYASLKEYSGLVDANDGDLGAPAWRIDGSGTDGQINAPEENSIPLRGIEV EDDSCNRNSLHFKRDRSGSANENLAGDLEDQNCVDDGDHLHPQAKRFKQDAFCDYQSLEHISTLQQHMEMVEDSIQRVTGDSENKDCHMEEKTSQGGLEE SRSVENGHDECVGMDRHGKSLDPDNAFQHNQHEIAHNANKIPQDISGNGLHLYSLVDEINCAKPRISNTAPSVGTPNKFFVNENKDNSDHSGQLKPSNSL CHPDATVRTNHISNGEKVGEEMVRKNPSGTGLDRNQHEVCVDPIDSDVDQSCKEKDVFSGSQSKDGQRQKAVCATNIDGGETSDDENDKSSTSNYFIQFR NIEKQCSYPAMPQLRRKKVPWTVQEEEMLKEGVQKFSSDGKFPWKDILEYGSSVFLSGRTTIDLKDKWRNMCKSIGSYSYLSST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68030			RING/FYVE/PHD zinc finger supe...		Potri.006G054401 [exp]	0	1
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Potri.005G010016 [exp]	20.09	0.8171
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G071000 [exp]	26.00	0.8014
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G070900 [exp]	49.59	0.7940
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G070000 [exp]	66.00	0.7810
					Potri.001G255904 [exp]	68.64	0.7917
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.009G082700 [exp]	68.89	0.7902
					Potri.017G069550 [exp]	78.97	0.7839
AT5G60280			Concanavalin A-like lectin pro...		Potri.009G036500 [exp]	83.68	0.7006
AT3G19230			Leucine-rich repeat (LRR) fami...		Potri.010G213101 [exp]	91.43	0.7705
AT4G35590		RKD5	RWP-RK domain-containing 5, RW...		Potri.005G101000 [exp]	93.88	0.7208

Compare expression of checked genes

Potri.006G054401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.