Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52600 193 / 2e-62 MYB AtMYB82 myb domain protein 82 (.1) AT5G40330 171 / 2e-53 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT5G14750 170 / 3e-53 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT5G35550 167 / 3e-51 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT3G13540 161 / 3e-49 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT3G27920 160 / 7e-49 MYB GL1, ATMYB0, AtGL1 GLABRA 1, myb domain protein 0 (.1) AT1G66370 155 / 1e-46 MYB ATMYB113 myb domain protein 113 (.1) AT1G74650 155 / 6e-46 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT3G23250 153 / 2e-45 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT4G38620 152 / 2e-45 MYB AtMYB4 myb domain protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127700 [exp] 358 / 4e-127 AT5G52600 201 / 2e-65 myb domain protein 82 (.1) Potri.012G080400 [exp] 166 / 2e-51 AT5G14750 210 / 3e-69 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.002G173900 [exp] 167 / 6e-51 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.013G056400 [exp] 167 / 8e-51 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.001G005100 [exp] 167 / 1e-50 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.003G219900 [exp] 167 / 1e-50 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.014G100800 [exp] 166 / 1e-50 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.013G056500 [exp] 167 / 2e-50 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.006G275900 [exp] 166 / 2e-50 AT1G22640 186 / 1e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006647 [exp] 196 / 3e-62 AT5G52600 186 / 6e-59 myb domain protein 82 (.1) Lus10038092 [exp] 192 / 7e-61 AT5G52600 185 / 1e-58 myb domain protein 82 (.1) Lus10039173 [exp] 169 / 6e-52 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 166 / 2e-50 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10000470 [exp] 163 / 2e-49 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 161 / 1e-48 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10033889 [exp] 155 / 5e-46 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10002056 [exp] 155 / 6e-46 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10003557 [exp] 153 / 3e-45 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10009522 [exp] 153 / 4e-45 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G066400.1 pacid=42768444 polypeptide=Potri.006G066400.1.p locus=Potri.006G066400 ID=Potri.006G066400.1.v4.1 annot-version=v4.1 ATGGAAAGCAAAGGAGCAAAGCCTCATGAATTCAAGAAAGGTTTGTGGAAACCAGAGGAGGACTTGATCCTGAAAACATATGTAGAGACTCATGGTGAAG GCAACTGGTCAACTGTGTCTAAGAGATCAGGTTTGATGAGATGTGGGAAGAGTTGCAGATTACGATGGAAGAATTATCTAAGACCCAATATTAGACGAGG TGGGATGTCCCAAGATGAAGAAGACATGATAATTAGAATGCATAAGCTTCTTGGCAACCGGTGGTCACTTATAGCCGGTCGACTTCCTGGTCGGACGGAC AACGATGTGAAAAACTACTGGAATACCCATTTAAACAAGAGATGCCCTTCAAGAAAAAGAAAAACCATCGACTCCAAACCTGATCAGAACGACAATAACA CCAAGAAGCAGTACAGAAGCAAGAGAATCCGTTCACTAAGCAATTCTCAGCCCACTTGCAACACGAGTCCAATAGGCAGCACTGAAGAATTGGAAGGGAA GAACCAAGAGAAAGAAGAGAGAAGTGCTGTGATCAGTGATGCATGGATACAACAAGATGCGCAGAGCATGAACTCTTGCATAGAATCTCCAATGGTGCTA CACAACAATGCTACTTTTTTCTTTGAAGATGACCCTTTCCTAACCTACTGGGATTCCTTCGATATGTTTGAATCATTAGGCTGTGGTGGTGACTTCTGGT AA
AA sequence Show only first row Show all	>Potri.006G066400.1 pacid=42768444 polypeptide=Potri.006G066400.1.p locus=Potri.006G066400 ID=Potri.006G066400.1.v4.1 annot-version=v4.1 MESKGAKPHEFKKGLWKPEEDLILKTYVETHGEGNWSTVSKRSGLMRCGKSCRLRWKNYLRPNIRRGGMSQDEEDMIIRMHKLLGNRWSLIAGRLPGRTD NDVKNYWNTHLNKRCPSRKRKTIDSKPDQNDNNTKKQYRSKRIRSLSNSQPTCNTSPIGSTEELEGKNQEKEERSAVISDAWIQQDAQSMNSCIESPMVL HNNATFFFEDDPFLTYWDSFDMFESLGCGGDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Potri.006G066400 [exp]	0	1
					Potri.007G042350 [exp]	3.46	0.8262
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G051300 [exp]	13.00	0.7528
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023004 [exp]	14.24	0.8311
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Potri.003G203600 [exp]	19.62	0.7208
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016500 [exp]	22.58	0.7209
AT1G71910			unknown protein		Potri.013G114000 [exp]	74.83	0.7093
AT1G09140		ATSRP30.1, ATSR...	Serine/Arginine-Rich Protein S...		Potri.013G015500 [exp]	81.52	0.7299
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Potri.010G052200 [exp]	87.68	0.6947	CIP4.1
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G441801 [exp]	97.54	0.6772
AT3G13130			unknown protein		Potri.016G007400 [exp]	120.07	0.6830

Compare expression of checked genes

Potri.006G066400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.