Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07540 371 / 8e-120 MYB TRFL2 TRF-like 2 (.1) AT3G12560 346 / 2e-110 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT3G46590 326 / 3e-103 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT5G13820 323 / 3e-101 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT5G59430 275 / 5e-84 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 178 / 6e-50 MYB TRFL4 TRF-like 4 (.1) AT1G17460 64 / 3e-10 MYB TRFL3 TRF-like 3 (.1.2) AT1G72650 62 / 7e-10 MYB TRFL6 TRF-like 6 (.1.2) AT2G37025 59 / 5e-09 TRFL8 TRF-like 8 (.1.2) AT1G72740 43 / 0.0006 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032000 [exp] 499 / 2e-168 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.001G241600 [exp] 489 / 2e-164 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.010G202400 [exp] 433 / 1e-142 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.008G057300 [exp] 426 / 8e-140 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.003G063700 [exp] 64 / 2e-10 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.001G170200 [exp] 61 / 2e-09 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.006G126300 [exp] 53 / 4e-07 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.013G154500 [exp] 47 / 4e-05 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024385 [exp] 545 / 0 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10010844 [exp] 516 / 1e-175 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10040285 [exp] 358 / 5e-114 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10002704 [exp] 346 / 2e-109 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10000947 [exp] 344 / 1e-108 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040795 [exp] 318 / 2e-99 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10016527 [exp] 317 / 9e-99 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10023406 [exp] 297 / 3e-91 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10013809 [exp] 60 / 2e-10 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 60 / 5e-09 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G086500.1 pacid=42767079 polypeptide=Potri.006G086500.1.p locus=Potri.006G086500 ID=Potri.006G086500.1.v4.1 annot-version=v4.1 ATGGTATTCCAAAGAAGGTTGGACTATGGTTTTGATGGCTACCAGGTTCCCGTGGTTCCTCGAGCATCTAGATCAGCTAGGGGGAGGGGACCGATCAGGA AGAAAAGTGAGAATAATCAGAAACATGCATTTGAAATTCTGGCTAGTGTAGCTGGAGAAATCTTGCAGGAGGAGGAAACTTCTGCTCCAACTAATACTGC TTGCGGTAAAGATCTTTGTAATGTTAAAAATACCATTCAACAGGAGCAAGTTGATAGAGGGAAGTTTCTTATAATAGAACCTTTGCTGGGAGAACCTTGT AATGAGAAAGCCTTTGCTTGCATTCCTGAGTTGCAAGGCCACTGGCATGGCAATGCATTGAATAAATTCTTGCATAACCAGGAAAGTTTCAACTCTCAGG GAAGCTTTGCTTCAGAGCGTTTTGATTATCCAGAAACAATATATGTTGCTGAAAAGTTGGTTGTTGTCAATAGCAAAAATGCTGGTGGAAGCTCTTCTTG TGAAATGAATGGAGAATCCTCTCATGCAAGGAAAATTTTTAAAGGCAAGGTAGAAGGTTTAACTGAGAGAAAGCCAGAAGCTGAATTAGTAAAAAGTAGC AGTATTGAAAGTGGAACTCTCCTTGTCAAAGATGGTTCAGAAGATGCAATGGATCTTGACGCAGGTTCTATTGGACATGCTAGTGTAGAAAGCAATGTAA AGGCATCTTTATTCAAGGATTGCATAGGCCTTTGTCCTTTTTCCAGGCCTTGCGCTGATGTAGAAGTAGTGAGCAGAGATGATGACGGAAAGTCTTCTGG GTGCTCTCAATATGGCGCCATGCCAAAGACTTCTAGGCCACTGTCATATACTGAAACTCGAAGAATGAGTAATCTTACTGCTTCCAGACACTGGCGAGCT GCTCCAATTTCGAAGAGTGGTGGCTACTTCAGAACTGACTGGAAAACAAAACCACCTTTTCGCAATGGAAGAACCAGCTATAGCTGTCAAAGATCTCAGA AGATTTTTCCTTTCAAGAAAAGGAAATTCTTTGATCAAAGTACATTACCTACATCTGATGGAGCATTTCATTGTGAAGACATTTTTAATTCTTCTAATAA GAGGACCAATGGCAATGACATGGTCTCAGCAACTGAAGCATCATCCTCAGTAAAAGGCCAACATGCATCTCTGGATTCAAGAGACTGTAATGTGAAGCTA AGTATTAAATCATTTAAGGTTCCGGAACTCTTTATTGAGATCCCTGCAACAGCAACTGTTGGCTCATTAAAGAGGACAGTCATGGAAGCAATAACTTCTA TACTTGGAGATGGACTACATGTTGGTATCCTTCTCCAAGGAAAGAAGGTTAGAGATGACAACAAAACCTTGCTCCAGACTGGAATCTCTGAAGATGATAA GCATAGTAATTTGGGTTTCATGTTGGAGTCCAGACATGCAAAAATGATGTCACCTCCCCACACTAAAAACCCTTCAAATTTACCTTTCAGTGCACCTGGT GGGATAACCAGGCATACAACTTCTTTGATGCTACAGGAAGGGACTTCCCATGCTTCCTCAGTTCCTGCAGAGACTAATTTTAGCAGCTCTGTTGGAAGTG ATCTCGGTGCAGTTTGCTCTCTTGCCAAGGCTTCGACTGCTGATAAGATGTCAGATTCACGAGCTCTGGTTCCAGTTCCTGCAATTGGCCGGGGTGCGTT ATCTGTAGTTCCCTTTAACTGCAAATCTATGCATCCTGAGTTTGGACAGCGCCGGATCAGGAGGCCATTTACAGTTTCAGAAGTAGAAGCCTTAGTTCAA GCAGTTGAGAGACTTGGAACTGGAAGGTGGCGTGATGTTAAATTGCATGCTTTTGACAAAGCAAACCATCGAACTTATGTTGATTTGAAGGATAAGTGGA AGACATTGGTGCACACGGCAAGAATCTCCCCTCAGCAAAGGAGGGGAGAACCGGTGCCGCAGGAGGTTCTAGACAGGGTCCTAGCTGCCCATGCCTACTG GTCATATCGGAGGCAACTGGTCAAAGCTGAAGTTTGA
AA sequence Show only first row Show all	>Potri.006G086500.1 pacid=42767079 polypeptide=Potri.006G086500.1.p locus=Potri.006G086500 ID=Potri.006G086500.1.v4.1 annot-version=v4.1 MVFQRRLDYGFDGYQVPVVPRASRSARGRGPIRKKSENNQKHAFEILASVAGEILQEEETSAPTNTACGKDLCNVKNTIQQEQVDRGKFLIIEPLLGEPC NEKAFACIPELQGHWHGNALNKFLHNQESFNSQGSFASERFDYPETIYVAEKLVVVNSKNAGGSSSCEMNGESSHARKIFKGKVEGLTERKPEAELVKSS SIESGTLLVKDGSEDAMDLDAGSIGHASVESNVKASLFKDCIGLCPFSRPCADVEVVSRDDDGKSSGCSQYGAMPKTSRPLSYTETRRMSNLTASRHWRA APISKSGGYFRTDWKTKPPFRNGRTSYSCQRSQKIFPFKKRKFFDQSTLPTSDGAFHCEDIFNSSNKRTNGNDMVSATEASSSVKGQHASLDSRDCNVKL SIKSFKVPELFIEIPATATVGSLKRTVMEAITSILGDGLHVGILLQGKKVRDDNKTLLQTGISEDDKHSNLGFMLESRHAKMMSPPHTKNPSNLPFSAPG GITRHTTSLMLQEGTSHASSVPAETNFSSSVGSDLGAVCSLAKASTADKMSDSRALVPVPAIGRGALSVVPFNCKSMHPEFGQRRIRRPFTVSEVEALVQ AVERLGTGRWRDVKLHAFDKANHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQEVLDRVLAAHAYWSYRRQLVKAEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.006G086500 [exp]	0	1
AT3G57710			Protein kinase superfamily pro...		Potri.005G068000 [exp]	3.16	0.8613
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	5.65	0.8736
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021400 [exp]	5.65	0.8782
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.005G155300 [exp]	6.78	0.8413
AT4G01995			unknown protein		Potri.002G194500 [exp]	8.66	0.8740
					Potri.002G048101 [exp]	12.00	0.8486
AT1G49510		EMB1273	embryo defective 1273 (.1)		Potri.005G149500 [exp]	12.96	0.8650
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Potri.008G160400 [exp]	19.62	0.8661
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Potri.013G108600 [exp]	20.49	0.8257
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Potri.012G065100 [exp]	22.02	0.8683

Compare expression of checked genes

Potri.006G086500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.