Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37650 723 / 0 GRAS SCL9 GRAS family transcription factor (.1) AT1G07530 615 / 0 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 564 / 0 GRAS GRAS family transcription factor (.1) AT2G29065 499 / 2e-168 GRAS family transcription factor (.1) AT5G59450 454 / 4e-151 GRAS SCL11 GRAS family transcription factor (.1) AT1G07520 453 / 1e-149 GRAS GRAS family transcription factor (.1) AT3G46600 437 / 5e-147 GRAS GRAS family transcription factor (.1.2.3) AT1G50600 212 / 1e-59 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 209 / 2e-59 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 206 / 3e-59 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G057400 [exp] 752 / 0 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.009G032700 [exp] 696 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 660 / 0 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.010G202300 [exp] 659 / 0 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 655 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 627 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242100 [exp] 612 / 0 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.009G033300 [exp] 607 / 0 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033100 [exp] 581 / 0 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010845 [exp] 776 / 0 AT2G37650 571 / 0.0 GRAS family transcription factor (.1) Lus10024384 [exp] 751 / 0 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10040284 [exp] 695 / 0 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 693 / 0 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 615 / 0 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040787 [exp] 522 / 5e-177 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 518 / 1e-174 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 516 / 5e-174 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 455 / 1e-155 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040789 [exp] 424 / 7e-140 AT3G46600 432 / 4e-145 GRAS family transcription factor (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.006G086600.7 pacid=42768603 polypeptide=Potri.006G086600.7.p locus=Potri.006G086600 ID=Potri.006G086600.7.v4.1 annot-version=v4.1 ATGGATCCTCGGTTAAGAGGTTATTCAATTTCAGTTAATGGAACCCAATTGGGAAACCAACCTATATCTGTGTTTTCGAATCAGGACCCTGTTTCCAGAC CCAGATTCGAAAATACTTTCGTTGATCATAATTGTAAGGAGTTTCATTATATTCCGCCCTATCCAAAGCCAACTGATGTAACCCCATATTCAAATCCGAC TCAAAAAGAAGACTCTCCCGAAGATTTTGACTTTTCAGATGTAACTTTGAGGTACATAAACCAGATGCTTATGGAAGAAGATACTGAAGATAAGACTTGT ATGCTTCAAGACTCTTTAGATCTTCAAGTAGCCGAGAAATCCTTTTATGATGTTCTTGGCAAGAAGTACCCTCCTTCACCAGAACCAAACCCCACTTTCA TCAGTCAAAATCGTGGGAACCTGCCTGATAGTTTACCCTGCAATTACATTTGTAGTAGTCGTAGTGATAGTGGCTATGTAGATGATAATGCTTGGATTCA CAATCCAAGCGATTACCATTCCTTTCAACTACAGATTCCACATGTTTCTAGCATATCCCAATCATCATATAGCTCTTCAAACAGTGTAATCACTACTGTA GATGGGCTGGTGGATTCTCCTAGCAGTAATTTTAAAGTCCCTGATTGGAGCGGTGAGAGCCGATCTATTTTGCACTTCAGGAAGGGTGTTGAGGAGGCTA GCAGATTTCTTCCCAGTGGTAATGACTTGTTTCTTAATATTGAGGCCAATAAGTTTTTATCTCAAGAGCCAAAGGTGAGGACTGGTGAAGTTGCTATCAA GGTGGAGAAACAAGATGGGGGGGAGCACTCACCTAGTGGACCTAGGGGAAAGAAGAATCCTCATAGGGAGGATGGGGATGTTGAAGAAGGGAGGAGCAGC AAACAACTGGCTGTTTATACCGAATCCACTTTGCGATCAGATATGTTTGATAAGGTATTACTTTGTATCCCAGGAGAAGGTCAGCCTGATTTGACAGCTC TTCGCGAGGCCTTCAAGAGTGCATCGATAAAAAATGAGCAGAATGGACAGGCAAAGGGATCCAGTGGTGGGAAGGGTCGTGGTAAGAAACAAAGTAGGAA AAGGGAGGTGGTGGATTTGAGAACCCTTTTAATAAATTGTGCCCAAGCTATTGCGGCTGATGACCGGAGGAGCGCAAATGAATTGCTAAAGCAGATTAGG CTGCATTCCTCTCCTTTTGGGGATGGAAATCGGAGATTGGCTCATTGCTTTGCTGATGGTCTTGAGGCACGCTTGGCAGGTACTGGAAGTCAGATTTACA AAGGCCTTGTTAGTAAGAGAACATCTGCGGCTGATCTCTTGAAAGCATACCGTCTTTATCTTGCTGCATGCCCTTTTAGAAAGGTCTCTAATTTTGTCTC TAACAAGACAATAAAGATTACGGCAGAAAATTCAATGAGGCTTCATGTTATCGATTTTGGCATTCTTTATGGTTTCCAATGGCCCACCTTTATTCATCGG CTGTCATGCAGACCAGGTGGACCGCCAAAGCTTCGGATGACTGGAATAGAATTTCCCCAACCTGGATTTCGGCCAGCAGAGCGAGTTGAGGAAACTGGAC GTCGCTTAGCAGCTTATGCTAAGGAGTTCAAAGTGCCCTTTGAGTACAATGCCATTGCAAAGAAATGGGAAACCATACAACTAGAGGAACTCAAGATTGA CCGGGATGAAGTTGTTGTTGTTAACTGTCTGTATCGGTCTAAGAACTTACTTGATGAAACAGTGGCAGTGGACAGTCCGAGGAACATTGTTCTTGATCTG GTAAGGAAGATAAATCCTGAAGTTTTCATTCATGGGATTACAAATGGGGCATACAATGCTCCTTTCTATGTTACTCGATTTCGAGAGGCACTGTTTCACT TTTCTGCAATGTTTGATATGCTTGAAACTATTGTTCCCCGTGAAGAATTAGAGAGGTTGGTGATTGAGAGAGATATTTTTGGCAGGGAGGCTCTGAATGT TATAGCTTGTGAAGGCTGGGAGAGAGTGGAGAGGCCAGAAACATACAAGCAATGGCAGGTCCGTTGCTTGAGGGCTGGGTTTGTGCAGTTGTCTTTTGAC CGGGAGATAGTGAAGCAAGCAACTGTTAAAGTGAGGCAGCGTTACCACAAAGATTTTCTGATCGATGAAGATAGCCGGTGGCTATTGCAAGGATGGAAGG GACGAATCATCTATACCCTTTCTGCTTGGAAACCTGCTAAAAAAGTTTGA
AA sequence Show only first row Show all	>Potri.006G086600.7 pacid=42768603 polypeptide=Potri.006G086600.7.p locus=Potri.006G086600 ID=Potri.006G086600.7.v4.1 annot-version=v4.1 MDPRLRGYSISVNGTQLGNQPISVFSNQDPVSRPRFENTFVDHNCKEFHYIPPYPKPTDVTPYSNPTQKEDSPEDFDFSDVTLRYINQMLMEEDTEDKTC MLQDSLDLQVAEKSFYDVLGKKYPPSPEPNPTFISQNRGNLPDSLPCNYICSSRSDSGYVDDNAWIHNPSDYHSFQLQIPHVSSISQSSYSSSNSVITTV DGLVDSPSSNFKVPDWSGESRSILHFRKGVEEASRFLPSGNDLFLNIEANKFLSQEPKVRTGEVAIKVEKQDGGEHSPSGPRGKKNPHREDGDVEEGRSS KQLAVYTESTLRSDMFDKVLLCIPGEGQPDLTALREAFKSASIKNEQNGQAKGSSGGKGRGKKQSRKREVVDLRTLLINCAQAIAADDRRSANELLKQIR LHSSPFGDGNRRLAHCFADGLEARLAGTGSQIYKGLVSKRTSAADLLKAYRLYLAACPFRKVSNFVSNKTIKITAENSMRLHVIDFGILYGFQWPTFIHR LSCRPGGPPKLRMTGIEFPQPGFRPAERVEETGRRLAAYAKEFKVPFEYNAIAKKWETIQLEELKIDRDEVVVVNCLYRSKNLLDETVAVDSPRNIVLDL VRKINPEVFIHGITNGAYNAPFYVTRFREALFHFSAMFDMLETIVPREELERLVIERDIFGREALNVIACEGWERVERPETYKQWQVRCLRAGFVQLSFD REIVKQATVKVRQRYHKDFLIDEDSRWLLQGWKGRIIYTLSAWKPAKKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.006G086600 [exp]	0	1
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.007G081900 [exp]	1.73	0.8669
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Potri.007G059000 [exp]	6.48	0.8327
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.008G008100 [exp]	7.00	0.8322
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	7.87	0.8609
AT3G62010			unknown protein		Potri.002G184400 [exp]	9.64	0.8495
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	10.95	0.8342	CNGC.1
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.002G221600 [exp]	12.48	0.8465
AT2G44280			Major facilitator superfamily ...		Potri.009G024600 [exp]	16.12	0.8160
AT5G07610			F-box family protein (.1)		Potri.008G016300 [exp]	19.20	0.8288
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	20.19	0.8271

Compare expression of checked genes

Potri.006G086600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.