Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LAC110c
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60020 806 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 768 / 0 LAC2, ATLAC2 laccase 2 (.1) AT2G38080 646 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G03260 633 / 0 LAC11 laccase 11 (.1) AT5G01190 613 / 0 LAC10 laccase 10 (.1) AT5G58910 595 / 0 LAC16 laccase 16 (.1) AT1G18140 578 / 0 LAC1, ATLAC1 laccase 1 (.1) AT5G05390 560 / 0 LAC12 laccase 12 (.1) AT2G40370 559 / 0 LAC5 laccase 5 (.1) AT2G30210 557 / 0 LAC3 laccase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G401300 [exp] 863 / 0 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.001G054600 [exp] 852 / 0 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 839 / 0 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.011G120200 [exp] 823 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.001G184300 [exp] 822 / 0 AT2G29130 830 / 0.0 laccase 2 (.1) Potri.011G120300 [exp] 822 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.009G034500 [exp] 819 / 0 AT2G29130 844 / 0.0 laccase 2 (.1) Potri.009G156600 [exp] 818 / 0 AT2G29130 831 / 0.0 laccase 2 (.1) Potri.009G156800 [exp] 818 / 0 AT2G29130 831 / 0.0 laccase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019122 [exp] 839 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 837 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10034614 [exp] 826 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10024378 [exp] 797 / 0 AT5G60020 853 / 0.0 laccase 17 (.1) Lus10010850 [exp] 776 / 0 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10035517 [exp] 692 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 677 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10032894 [exp] 662 / 0 AT2G38080 894 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 650 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10026512 [exp] 643 / 0 AT5G03260 919 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.006G087500.1 pacid=42767532 polypeptide=Potri.006G087500.1.p locus=Potri.006G087500 ID=Potri.006G087500.1.v4.1 annot-version=v4.1 ATGGGTTCTGCCTTTTTGAGGATTTTAGTCACTGCGTTGTGTGCTCTTTGGATTTTCTCTGAGCTGGTAGTTGCAAAGCATGCAGGCATTACTAGACATT ACAAGTTTGACATCAAGTTGCAAAATGTGACGAGGTTGTGCCGGACAAAGAGCATCGTTACCGTCAATGGTCAGATCCCTGGGCCTCGAATCATAGCAAG GGAAGGGGATCGGCTCTTGATCAAGGTCGTTAACCATGTCCAATACAATGTGACACTCCATTGGCATGGAATCAGGCAACTAAGGAGCGGATGGGCAGAT GGACCTGCCTACGTAACACAGTGCCCAATTCAAACGGGACAGAGCTATGTATACAATTTCACAGTTACTGGACAAAGAGGGACATTGTTCTGGCATGCTC ACATTTCATGGTTAAGAGCTACCCTTTATGGACCCATTGTCATCCTCCCTAAGAAAGGCGTTTCTTACCCATTTCCACTACCTCACAAAGAAGTCCCTAT CATTTTTGGAGAATGGTGGAAAGCAGACACGGAGAAAATTATCAGCCAAGCCTTGAAAACAGGAGGAGCGCCAAATATTTCTGATGCCTACACCATTAAT GGTCATCCTGGACTTTTGTATAACTGTTCAGCCAAAGATACATTCAAGCTCAAGGTGAAGCCAGGAAAAACCTATCTCCTTCGTTTAATCAATGCTGCAC TTAACGACGAGCTCTTCTTCAGCATTGCAAACCACAGCCTCACTGTGGTTGAAGCTGACGCAGTTTACGTGAAACCCTTTAAAACCCACATTGTACTCAT CACCCCGGGACAAACCACCAATGTTCTACTCATGGCCAAAGCTAAGGCCCCTAATTCCACCTTTCTTATGGCCGCTAGGCCATATGCCACCGGCCCAGGC TCCTTTGACAATACAACCACTGCTGGAATACTCGAATATGACCAGAACCCTTCTGCAACAAACTCCAAAAGCAAGAACAAGAAACTCCCTCTTCTTAAAC CGTCTCTTCCAGTGTTTAATGACACAACATTTGCCACAAAGTTTGTCAAGAAAATCCGTAGCTTGGCCAATGCAAGATTCCCAGCTAAGGTCCCAAAGAA AGTTGACAGACGCTTCTTTTTCACAATAGGTCTAGGATCACTCCCTTGCTCACAAAACAAGACCTGCCAAGGACCTAATAACACCATGTTTGCAGCTTCC GTCAACAATGTGTCATTTGTGCAGCCAAATATAGCCCTCCTGCAATCTCATTTCCTTAACCGGTCAAAGGGTGTGTACACAACTGATTTCCCTACCAACC CACCTTTCAAATTCAACTATACAGGGACACCGCCTAGCAATACCATGACTGCCAAAGGAACCAAGGTGGTGGTGCTTCCTTTCAATACTAGCGTGGAGTT GGTGATGCAGGACACCAGCATTATTGGTGCAGAGAGTCACCCTCTTCACCTCCATGGCTTCAACTTCTTTGTGGTTGGTCAGGGTTTTGGCAACTTTGAC CCCAAGAAGGACCCTGTCAAGTTCAACCTTGTTGACCCTGCCGAGAGGAACACTGTTGGTGTGCCATCTGGCGGGTGGGTCGCCATACGGTTCCTTGCTG ACAATCCAGGAGTTTGGTTCATGCACTGTCATTTGGAAGTACACACCAGCTGGGGCCTGAAGATGGCTTGGGTGGTCAATGACGGAAAACGGCCGAGCCA AAAGCTGCCACCTCCACCTTCTGATCTCCCCAAGTGTTAA
AA sequence Show only first row Show all	>Potri.006G087500.1 pacid=42767532 polypeptide=Potri.006G087500.1.p locus=Potri.006G087500 ID=Potri.006G087500.1.v4.1 annot-version=v4.1 MGSAFLRILVTALCALWIFSELVVAKHAGITRHYKFDIKLQNVTRLCRTKSIVTVNGQIPGPRIIAREGDRLLIKVVNHVQYNVTLHWHGIRQLRSGWAD GPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPKKGVSYPFPLPHKEVPIIFGEWWKADTEKIISQALKTGGAPNISDAYTIN GHPGLLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSLTVVEADAVYVKPFKTHIVLITPGQTTNVLLMAKAKAPNSTFLMAARPYATGPG SFDNTTTAGILEYDQNPSATNSKSKNKKLPLLKPSLPVFNDTTFATKFVKKIRSLANARFPAKVPKKVDRRFFFTIGLGSLPCSQNKTCQGPNNTMFAAS VNNVSFVQPNIALLQSHFLNRSKGVYTTDFPTNPPFKFNYTGTPPSNTMTAKGTKVVVLPFNTSVELVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFD PKKDPVKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWVVNDGKRPSQKLPPPPSDLPKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087500 [exp]	0	1	LAC110c
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	1.73	0.9591
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	2.00	0.9661
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.018G063500 [exp]	2.00	0.9591	PtrSuSY1,Pt-SUS1.2
AT1G57560	MYB	ATMYB50	myb domain protein 50 (.1)		Potri.015G082700 [exp]	2.44	0.9538
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	3.16	0.9635
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.006G129200 [exp]	7.48	0.9519	Pt-FLA11.1
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	7.74	0.9539	Pt-FLA11.2
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.006G104400 [exp]	8.00	0.9294
AT3G10700		GalAK	galacturonic acid kinase (.1)		Potri.006G070500 [exp]	9.48	0.9475
AT4G23690			Disease resistance-responsive ...		Potri.013G142702 [exp]	11.53	0.9374

Compare expression of checked genes

Potri.006G087500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.