Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LAC110a
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09220 691 / 0 LAC7 laccase 7 (.1) AT5G01040 649 / 0 LAC8 laccase 8 (.1) AT5G01050 649 / 0 Laccase/Diphenol oxidase family protein (.1) AT5G05390 580 / 0 LAC12 laccase 12 (.1) AT2G40370 549 / 0 LAC5 laccase 5 (.1) AT2G30210 541 / 0 LAC3 laccase 3 (.1) AT2G38080 520 / 3e-180 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G03260 515 / 1e-178 LAC11 laccase 11 (.1) AT5G07130 513 / 3e-177 LAC13 laccase 13 (.1) AT5G60020 504 / 4e-174 LAC17, ATLAC17 laccase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106000 [exp] 925 / 0 AT3G09220 686 / 0.0 laccase 7 (.1) Potri.016G106300 [exp] 909 / 0 AT3G09220 676 / 0.0 laccase 7 (.1) Potri.016G106100 [exp] 907 / 0 AT3G09220 672 / 0.0 laccase 7 (.1) Potri.010G183600 [exp] 575 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073700 [exp] 563 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 561 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.007G023300 [exp] 560 / 0 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.013G152700 [exp] 559 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.008G073800 [exp] 554 / 0 AT5G05390 893 / 0.0 laccase 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035546 [exp] 754 / 0 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10027747 [exp] 751 / 0 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10002227 [exp] 547 / 0 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10023189 [exp] 546 / 0 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10017427 [exp] 543 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10026512 [exp] 538 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10027782 [exp] 513 / 5e-178 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10019122 [exp] 514 / 7e-178 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 513 / 1e-177 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10035517 [exp] 511 / 1e-176 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.006G094100.1 pacid=42769312 polypeptide=Potri.006G094100.1.p locus=Potri.006G094100 ID=Potri.006G094100.1.v4.1 annot-version=v4.1 ATGTTACGTCTTCTGTTTTGGTTAACATGTGCTCTGGTTCTTCTAGCTTCTTCAGTGGCTTCTGCTGCAATTGTGGAACACTCATTCTATGTGAAAAACC TTACAGTTCGTCGGCTGTGCACTGAGCAAGTGGTGACTGCAGTGAATGGAAGCCTACCAGGCCCAACACTTCGCGTTCAAGAGGGCGACACCCTTAAAGT CCACGTTTTTAACAAGTCACCCTACAACATGACACTTCACTGGCATGGAGTGTTTCAATTACTTAGTGCCTGGGCGGATGGACCTAATATGGTAACTCAA TGTCCAATACCGCCTGGAGGTAAATATACCTACCAATTTAAACTCCTCAAGCAAGAAGGTACTCTATGGTGGCATGCTCATGTCAGTTGGCTCCGAGCAA CAGTTTATGGGGCACTCATTATCCGTCCAAGATCCGGCCACCCTTACCCTTTCCCAAAACCCGACAAAGAAGTTCCCATTTTATTTGGAGAGTGGTGGAA TGCTAATGTTGTTGATGTCGAAAACCAGGCTCTAGCCAGTGGTGCAGCGCCTAACACTTCGGATGCCTTCACCATTAATGGACTCCCCGGGGATCTCTAC CCTTGCTCTCAAAACAGAATATTCAAGCTTAAGGTACAGAAAGGAAAGACTTATCTCCTCCGAATAATCAACGCTGCACTCAATAATGAGCTCTTTTTCA AGATAGCCAATCATAATATGAAAGTTGTTGCTGTTGATGCCGGGTACACGGTGCCCTACGTCACTGGCGTTGTTGTCATCGGCCCCGGCCAGACCGTGGA CGTTCTCCTCGCAGCAGACCAGGAAGTGGGATCTTATTACATGGCTGCAAACGCATATTCTAGTGCTGCTGGTGCGCCATTTGATAACACGACGACTAGA GGAATTGTTGTCTACGAAGGAGCACCCACATCAGCAACTCCCATAATGCCTCTAATGCCTGCCTTCAATGACACCCCAACTGCTCATAAGTTTTTCACCA ACATTACTGGCCTGGCTGGTGGGCCTCATTGGGTCCCAGTCCCACGTCAGATTGATGAGCACATGTTTGTGACAATGGGCTTGGGGCTCTCAATTTGCCC AACGTGTTCAAATGGGACGCGACTCTCTGCTAGCATGAACAATTTCTCATTTGTGAGTCCTACAACTTTGTCCATGCTGCAAGCCTTCTTTTTCAATGTA AGCGGAATCTACACTCCTGATTTCCCTGATACCCCTCCAATAAAATTTGACTACACCAACGCCAGCATCAACGCCCTAAATCCATCCCTGTTAATTACAC CTAAATCAACAAGCGTGAAGGTGTTGAAGTATAATTCCACGGTGGAGATGGTGTTACAGAACACAGCTATTCTTGCCGTGGAGAATCATCCCATGCATCT TCACGGTTTCAATTTCCATGTGTTGGCTCAAGGGTTTGGAAACTATGATCCCGTTAAAGACCCTAAGAAGTTCAATCTCGTCAATCCACAATCACGTAAC ACCATTGGTGTTCCAGTGGGAGGATGGGCAGTCATAAGATTCACAGCCAATAATCCAGGTGTGTGGTTCATGCACTGTCATCTAGATGTGCACTTGCCCT GGGGATTAGCTACAGCTTTCGTCGTTAAGAATGGACCGACGGAAGACTCTACTTTGCCGCCACCTCCAGCTGATCTGCCTCAATGTTAG
AA sequence Show only first row Show all	>Potri.006G094100.1 pacid=42769312 polypeptide=Potri.006G094100.1.p locus=Potri.006G094100 ID=Potri.006G094100.1.v4.1 annot-version=v4.1 MLRLLFWLTCALVLLASSVASAAIVEHSFYVKNLTVRRLCTEQVVTAVNGSLPGPTLRVQEGDTLKVHVFNKSPYNMTLHWHGVFQLLSAWADGPNMVTQ CPIPPGGKYTYQFKLLKQEGTLWWHAHVSWLRATVYGALIIRPRSGHPYPFPKPDKEVPILFGEWWNANVVDVENQALASGAAPNTSDAFTINGLPGDLY PCSQNRIFKLKVQKGKTYLLRIINAALNNELFFKIANHNMKVVAVDAGYTVPYVTGVVVIGPGQTVDVLLAADQEVGSYYMAANAYSSAAGAPFDNTTTR GIVVYEGAPTSATPIMPLMPAFNDTPTAHKFFTNITGLAGGPHWVPVPRQIDEHMFVTMGLGLSICPTCSNGTRLSASMNNFSFVSPTTLSMLQAFFFNV SGIYTPDFPDTPPIKFDYTNASINALNPSLLITPKSTSVKVLKYNSTVEMVLQNTAILAVENHPMHLHGFNFHVLAQGFGNYDPVKDPKKFNLVNPQSRN TIGVPVGGWAVIRFTANNPGVWFMHCHLDVHLPWGLATAFVVKNGPTEDSTLPPPPADLPQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09220		LAC7	laccase 7 (.1)		Potri.006G094100 [exp]	0	1	LAC110a
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.016G101400 [exp]	1.00	0.9876	RBE.1
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Potri.010G211800 [exp]	2.82	0.9762
AT2G03830		RGF8	root meristem growth factor 8,...		Potri.010G138001 [exp]	3.46	0.9723
AT4G22810	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G116900 [exp]	5.47	0.9727
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	6.32	0.9702
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.010G159900 [exp]	6.48	0.9588	HIUHASE.2
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447500 [exp]	6.48	0.9630
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Potri.008G049200 [exp]	6.92	0.9585
AT1G13480			Protein of unknown function (D...		Potri.008G109500 [exp]	10.67	0.9332
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162100 [exp]	10.81	0.9580

Compare expression of checked genes

Potri.006G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.