Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrAUX1,AUX1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38120 795 / 0 MAP1, WAV5, PIR1, AUX1 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) AT5G01240 785 / 0 LAX1 like AUXIN RESISTANT 1 (.1.2) AT2G21050 729 / 0 LAX2 like AUXIN RESISTANT 2 (.1) AT1G77690 719 / 0 LAX3 like AUX1 3 (.1) AT5G41800 59 / 3e-09 Transmembrane amino acid transporter family protein (.1) AT1G08230 52 / 7e-07 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT2G39130 44 / 0.0003 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113600 [exp] 853 / 0 AT2G38120 796 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.008G066400 [exp] 786 / 0 AT2G38120 746 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.010G191000 [exp] 784 / 0 AT2G38120 734 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.009G132100 [exp] 722 / 0 AT2G21050 832 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.004G172800 [exp] 721 / 0 AT2G21050 829 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.002G087000 [exp] 721 / 0 AT1G77690 745 / 0.0 like AUX1 3 (.1) Potri.005G174000 [exp] 719 / 0 AT1G77690 776 / 0.0 like AUX1 3 (.1) Potri.003G138100 [exp] 76 / 2e-14 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G093600 [exp] 67 / 1e-11 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004831 [exp] 808 / 0 AT2G38120 853 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10002498 [exp] 799 / 0 AT2G38120 842 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10028278 [exp] 771 / 0 AT2G38120 801 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10040212 [exp] 764 / 0 AT2G38120 798 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10025057 [exp] 721 / 0 AT2G21050 866 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10034488 [exp] 720 / 0 AT2G21050 864 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10025628 [exp] 716 / 0 AT1G77690 808 / 0.0 like AUX1 3 (.1) Lus10028078 [exp] 716 / 0 AT1G77690 810 / 0.0 like AUX1 3 (.1) Lus10003903 [exp] 66 / 3e-11 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10009386 [exp] 62 / 4e-10 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.006G098300.5 pacid=42768943 polypeptide=Potri.006G098300.5.p locus=Potri.006G098300 ID=Potri.006G098300.5.v4.1 annot-version=v4.1 ATGTTGTCTCAGAAGCAAGCAGAAGAAGCAATAGTATCCAACTATAGCGAGACAGATCAACACGAGGGCAAAGAAGAAGAGAAAGAAGAGAACCACTCCA TTTTTAGTGTCAAGAGTGTTCTTTGGCATGGTGGTTCTGCCTGGGATGCCTGGTTCAGCTGTGCTTCTAATCAAGTGGCACAAGTGCTGTTGACACTACC GTACTCTTTCTCTCAGCTTGGTATGCTATCAGGGATATTGCTTCAGATATTCTATGGACTCTTAGGAAGCTGGACAGCTTACCTTATAAGTGTGCTTTAC ATTGAGTACAGAAGCAGAAAGGCGAAAGAGAACGTTAGCTTCAAGAACCATGTCATTCAGTGGTTTGAAGTGCTTGATGGGTTACTGGGTCCATACTGGA AGGCAGTAGGACTTGCTTTCAACTGTACTTTCTTACTATTTGGATCTGTAATTCAACTTATTGCTTGTGCAAGTAATATTTACTACATCAATGACCACTT GGACAAGAGGACTTGGACTTACATTTTTGGAGCTTGTTGTGCCACCACAGTTTTCATACCCTCTTTTCACAACTACCGTATTTGGTCTTTTCTTGGTCTT GGTATGACCACATACACTGCCTGGTACATGGCCATAGCAGCTTTTGTTCATGGCCAAGGTGAAGGAGTGAAACATTCTGCTCCTACAAAGTTAGTGCTTT ACTTCACCGGAGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTCACTGTGGAAATTATGCATGCCATGTGGAAGCCGCAAAAGTTCAAGTGTAT TTACTTGTTAGCTACTCTCTACGTGTTCACACTGACAATTCCGTCAGCTTCCGCCGTCTATTGGGCCTTTGGTGACGAGCTCCTCAACCATGCCAATGCC TTTTCTCTCCTCCCCAAGAATGGATTCCGTGATGCCGCCGTTATCCTCATGCTTATCCACCAGTTCATCACATTTGGGTTTGCGTGTACGCCATTGTACT TTGTGTGGGAGAAGGTAATAGGGATGCATGACACAAGGAGCATTTGCTTGAGGGCACTTGCAAGGCTACCGGTGGTGGTTCCGATATGGTTTTTAGCTAT AATATTCCCTTTCTTTGGACCTATCAACTCAGCCGTTGGTGCTCTTCTGGTTAGCTTCACGGTTTACATCATCCCATCTTTAGCCCACATGCTCACTTAC AGAAAAGCCTCTGCCAGACAGAATGCTGCAGAAAAGCCGCCTCCCTTTATGCCAAGCTGGACAGCCATGTATGTTATAAACGCCTTCGTGGTGGTGTGGG TGCTGGTGGTTGGTTTTGGGTTCGGTGGATGGGCTAGCATGACAAACTTTGTTAGGCAAGTAGACACATTTGGGCTCTTTGCCAAGTGCTATCAATGCAA GCCACCAGCACCTCCAGCAGCAGCACCGCCACACCATCGCTGA
AA sequence Show only first row Show all	>Potri.006G098300.5 pacid=42768943 polypeptide=Potri.006G098300.5.p locus=Potri.006G098300 ID=Potri.006G098300.5.v4.1 annot-version=v4.1 MLSQKQAEEAIVSNYSETDQHEGKEEEKEENHSIFSVKSVLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILLQIFYGLLGSWTAYLISVLY IEYRSRKAKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL GMTTYTAWYMAIAAFVHGQGEGVKHSAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKCIYLLATLYVFTLTIPSASAVYWAFGDELLNHANA FSLLPKNGFRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTRSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTY RKASARQNAAEKPPPFMPSWTAMYVINAFVVVWVLVVGFGFGGWASMTNFVRQVDTFGLFAKCYQCKPPAPPAAAPPHHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.006G098300 [exp]	0	1	PtrAUX1,AUX1.2
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Potri.008G155700 [exp]	7.87	0.7730
AT1G26100			Cytochrome b561/ferric reducta...		Potri.010G131100 [exp]	9.94	0.7885
AT5G41620			unknown protein		Potri.001G096200 [exp]	14.07	0.7567
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.002G014100 [exp]	16.97	0.7568
AT2G40270			Protein kinase family protein ...		Potri.010G185300 [exp]	21.21	0.7014
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G026600 [exp]	24.81	0.7468
AT5G45540			Protein of unknown function (D...		Potri.015G116201 [exp]	26.07	0.7673
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.013G041400 [exp]	28.77	0.7030
AT5G45540			Protein of unknown function (D...		Potri.007G123100 [exp]	38.20	0.7641
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	40.98	0.7212

Compare expression of checked genes

Potri.006G098300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.