Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DREB2.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38340 91 / 2e-20 AP2_ERF DREB2E, DREB19 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) AT5G05410 91 / 4e-20 AP2_ERF DREB2A DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) AT1G75490 81 / 2e-17 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT3G11020 83 / 3e-17 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT2G40340 79 / 7e-16 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding superfamily protein (.1) AT2G40350 75 / 7e-16 AP2_ERF DREB2H Integrase-type DNA-binding superfamily protein (.1) AT5G18450 77 / 2e-15 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT3G57600 76 / 4e-15 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT1G46768 72 / 7e-15 AP2_ERF RAP2.1 related to AP2 1 (.1) AT1G77200 69 / 6e-13 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126100 [exp] 526 / 0 AT2G38340 96 / 4e-22 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.010G183700 [exp] 89 / 1e-19 AT5G05410 124 / 1e-33 DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) Potri.008G073600 [exp] 86 / 1e-18 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 83 / 1e-17 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 82 / 4e-17 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.002G029400 [exp] 81 / 5e-17 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.005G233300 [exp] 79 / 1e-16 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.010G072400 [exp] 67 / 4e-13 AT3G23230 85 / 1e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.006G261200 [exp] 68 / 5e-13 AT5G25190 169 / 9e-54 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012226 [exp] 111 / 4e-27 AT2G40340 137 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10002855 [exp] 110 / 8e-27 AT2G40340 132 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10023633 [exp] 89 / 2e-19 AT2G40340 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10034902 [exp] 87 / 4e-19 AT2G40340 172 / 7e-52 Integrase-type DNA-binding superfamily protein (.1) Lus10003581 [exp] 83 / 3e-18 AT2G40340 139 / 6e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10010632 [exp] 82 / 1e-17 AT1G75490 174 / 6e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 81 / 6e-17 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10006127 [exp] 80 / 2e-16 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10024298 [exp] 79 / 2e-16 AT1G75490 159 / 1e-48 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 77 / 2e-15 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.006G104200.1 pacid=42767467 polypeptide=Potri.006G104200.1.p locus=Potri.006G104200 ID=Potri.006G104200.1.v4.1 annot-version=v4.1 ATGAGTATTGACATGGAGGATTCTTTGAGACAGAGTTCTTTGCTAGGGTTTAGCAGCAAGGACAGGAAGAGAAGGCGGAATGGTTGTGAATCAATAGAAG ATACACTTGCAAGGTGGAAGAAACACAACAAACTTCAAGTAAGCAAGGTTCCAGGGAAGGGTTCAAAGAAGGGTTGTATGAAAGGAAAAGGTGGCCCGGA GAATATGAACTGCAGATACAGGGGTGTTAGACAGAGAACTTGGGGCAAGTGGGTTGCTGAAATCAGAGAACCTGTCAAGAAATGCAGTTTAATGAACAAA CAAGGAAGTAGACTCTGGCTTGGTACATTTTCTACTGCTATTGAAGCTGCTTGTGCTTATGATTATGCTGCAAAGCTTATGTATGGTCCTAATGCCATAC TCAATTTCCCTGACTACCCAGTTCAATCTGGGAATCACCTGGATAATATGTCGTCTTCGATTACTGCAACTGAGACATCATCAACTGAATCTAGGACAGC ATTGGATAGCTACGAGGATAATAAGGTTGACAAATTAAAGATTAATCATTGTGGGTCTAGAGAAGGAAATAACCAATCAGGCTTTTCTAGGATATGTGCT GTCGACGAATCAGAAGAGGAAGTTGAGAAAATCAGGGTGGCGGAGAGCAGTGCAATGGAGTTGAAAGCTGTGGAATGGAATTTAACAGATGATTGGAAAT CGTCTCATCATATTGAAGCTGAAGCACCAGTATTGAGGGAAGAAATAGATGGAGAACTTGCAGGAATTTTGAGATCTTGGGGCTGTTACGGTATCAATAA CAGATATAGATTCTTGCAGAATGAGACTGAAAATGTAGAACATAAGAAATTGAAGAATGAGGTTGTGGAATCCAGCATGAGCACCAGACTCAATGAGTGC GTAGATTCGGACTATGATATGAGAACTGATCATAAACCTATCTATGATGTTGAGAAGCCATTAATGAGGGAAGCAGCAGCAGGGGAAGAGTTTTCAGGCT TGAAATTCAGCAACTATAATCCCTTTGAGACCACGCATGATCACAGGAACCCGGGTTTATGCAATCAAGAAATTGATATCAAGCCTTTTATCCAAGATAT TTCTGACAATTCTGTATTAAAAGGAGGGGGGAATTATGGTTATGATCCCGCGAAGGTTGGTTCTGCAAGCCACCTACAGAGTAGAAGGCCATCAGGACTG TCCTGCCAGTTGCAGACCCCATCAACCAATCTACCAGGGAGCTTGAGTTACTTTCAGGAGGCAGATATAGGCCTGGGTTGGAATTTTGATCTATCACAGC AGGACTTCAACGGGGGCTTAGTTGGAGAGCCAGGCCTGCTTGATCAGTGGTACCCTGAATTACAATTCTAG
AA sequence Show only first row Show all	>Potri.006G104200.1 pacid=42767467 polypeptide=Potri.006G104200.1.p locus=Potri.006G104200 ID=Potri.006G104200.1.v4.1 annot-version=v4.1 MSIDMEDSLRQSSLLGFSSKDRKRRRNGCESIEDTLARWKKHNKLQVSKVPGKGSKKGCMKGKGGPENMNCRYRGVRQRTWGKWVAEIREPVKKCSLMNK QGSRLWLGTFSTAIEAACAYDYAAKLMYGPNAILNFPDYPVQSGNHLDNMSSSITATETSSTESRTALDSYEDNKVDKLKINHCGSREGNNQSGFSRICA VDESEEEVEKIRVAESSAMELKAVEWNLTDDWKSSHHIEAEAPVLREEIDGELAGILRSWGCYGINNRYRFLQNETENVEHKKLKNEVVESSMSTRLNEC VDSDYDMRTDHKPIYDVEKPLMREAAAGEEFSGLKFSNYNPFETTHDHRNPGLCNQEIDIKPFIQDISDNSVLKGGGNYGYDPAKVGSASHLQSRRPSGL SCQLQTPSTNLPGSLSYFQEADIGLGWNFDLSQQDFNGGLVGEPGLLDQWYPELQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38340	AP2_ERF	DREB2E, DREB19	dehydration response element-b...		Potri.006G104200 [exp]	0	1	Pt-DREB2.5
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Potri.011G138500 [exp]	4.47	0.7474	PMZ.1
AT1G80040			unknown protein		Potri.005G121100 [exp]	8.36	0.7471
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.012G001500 [exp]	13.30	0.7431
AT5G13200			GRAM domain family protein (.1...		Potri.003G165600 [exp]	14.73	0.7219
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.001G307500 [exp]	16.70	0.7210
AT5G13200			GRAM domain family protein (.1...		Potri.003G165700 [exp]	17.14	0.7245
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.014G107900 [exp]	18.65	0.6976
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.015G013600 [exp]	23.55	0.7298
AT3G12410			Polynucleotidyl transferase, r...		Potri.002G185500 [exp]	25.69	0.7121
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Potri.011G010700 [exp]	31.81	0.6711	Pt-ALE.2

Compare expression of checked genes

Potri.006G104200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.