Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54220 640 / 0 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 387 / 7e-127 GRAS GRAS family transcription factor (.1) AT3G03450 217 / 2e-61 GRAS RGL2 RGA-like 2 (.1) AT1G66350 214 / 2e-60 GRAS RGL1 RGA-like 1 (.1) AT5G48150 206 / 6e-58 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 203 / 1e-57 GRAS SCL21 SCARECROW-like 21 (.1) AT1G14920 201 / 7e-56 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G50600 201 / 4e-55 GRAS SCL5 scarecrow-like 5 (.1) AT1G63100 201 / 8e-55 GRAS GRAS family transcription factor (.1) AT2G01570 198 / 4e-54 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143833 [exp] 1080 / 0 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G021400 [exp] 427 / 6e-142 AT5G41920 509 / 2e-180 GRAS family transcription factor (.1) Potri.016G018900 [exp] 422 / 3e-140 AT5G41920 506 / 5e-179 GRAS family transcription factor (.1) Potri.002G036100 [exp] 407 / 2e-133 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G226800 [exp] 399 / 8e-130 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.001G326000 [exp] 302 / 4e-91 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.001G109400 [exp] 230 / 4e-65 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.003G122400 [exp] 228 / 2e-64 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.008G131700 [exp] 223 / 9e-63 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016496 [exp] 579 / 0 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 570 / 0 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10003540 [exp] 393 / 2e-127 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 385 / 4e-124 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10012554 [exp] 300 / 2e-89 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10041540 [exp] 297 / 3e-89 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10010462 [exp] 257 / 6e-77 AT5G41920 327 / 2e-108 GRAS family transcription factor (.1) Lus10033583 [exp] 223 / 6e-63 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 220 / 4e-62 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10006322 [exp] 213 / 5e-60 AT1G63100 588 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.006G114200.1 pacid=42766918 polypeptide=Potri.006G114200.1.p locus=Potri.006G114200 ID=Potri.006G114200.1.v4.1 annot-version=v4.1 ATGGCAGCAGCGGCCTCGTATTTACTCGGTAGACTTAGCAACGACAACATTAGTATCAATAACATCACCATTGATAATAGCGGTGGCAGCTGCAGCAACA TCGACAACGCCAGTACTGCTTCATTGACAAGTGCCTCCTTGCTTACCAACGGCGGCAACCAAGCAACGACAATACCAGTAATAGAAGCAGCAACTGGAAG GATGGTGAGGAAGAGGATGGCTTCGGAGATGATGGAAGTGCAATCAACAATGACTCCTCTAAATCAGAGGTTATCTCGTGGTAACACCAACGTCTATTCA CTTTCAATATCAGACAATAATAATGATGATGTTATTGGTATGACTAGAGGTATCGGTGCCTCTTCTTTTACTAGTTGTTCTAACAACAATATTAACCCTA ATAACCTCAACCCAATCTTATATCCACTCCTCAACTACTCCACTATGACTTCTATGTTACCTTCTTCCACGAACTTGACAGCTATTACATCAGCCGGGTC TGCTTCTGTGTCCGTTTCTGGGTTTTTATCCTCTACGCCATCGACCAACTTAGCCACTAGCTGTAATGACAACCAATCCCAACTCCCAGCCGTATGTGGT TTCTCTGGTCTGCCCTTGTTCCCTCCTGAAAGAGAAAGAAACATTGTCCGTTCGAACGCCGTCCCTCCACCCGGCCTTATCACTACCAGCTCTGCTTCTA CCCCTACGCCTCCTTCTATGGAAGATGCCGCACCCGCCACTGCCTGGATTGATGGCATCATAAAGGACCTGCTCCACAGTTCCACCAACGTGTCCGTTCC TCAGCTCATTCAGAATGTGAGGGAGATTATCTACCCTTGCAACCCCAATCTAGCCTCCCTTCTCGAGTACAGGCTCCGGTCCCTGACAGACCCGATAATC CCGGCCAATATTTACCCGGTGGAGAGGAGAAGGAATAAGGAGGCAGCAGCAGTGCCATTGCCGTTTCAGAGGAATTATATTCAAGGGCATGCCCCTTCCG GCCTCTCTCTTGATCTTGATCATGTCTCCAATTCCGCTCTTCCTCCAGTTTCTTCACATGTTGTAAGTCACTACTCTAACTGGGGGCCGACGCCACCTCT CATTTGCCAACCAAACATCCAACAGCAACACCAGCAGCCACAAGCCCACCTTGTTCATGATCAGCAACAGCAAGAGAGTCCATCTTCAACTTCCAATGTT ACACCAACTATTCTAGCATTAAATCAAGGACATCCTCCACAACAAGCACAAGATCAGCAGCAGGAAAAATCATCATCTGCGGAGACACAAGTAGCCAGTA GCACACCTCCTCCCTCTTCATCAGTAGCTGCCAGCCGAGATAAGAAAGAGGAGATGCGGCAGCAAAAGAGAAACGAAGAAGGCTTGCACCTTCTGACCTT GCTCCTCCAATGCGCGGAGGCTGTCTCAGCTGATAATTTTGAGGAAGCTAACAAGATGCTACTTGAGATCTCGGAGCTGTCCACGCCTTTCGGAACTTCA GCGCAGCGTGTGGCTGCGTACTTCTCAGAGGCTATGTCAGCGAGGCTGGTCAGCTCATGCTTGGGGATATACGCGACGCTTCCTTCGATGCCTCAAAGCC ATACCCAGAAGATGGCTTCGGCCTTTCAGGTGTTCAATGGAATTAGCCCTTTTGTCAAGTTCTCTCATTTCACAGCAAACCAAGCGATTCAAGAAGCTTT TGAAAGGGAAGAGAGAGTTCACATCATAGATCTGGACATCATGCAAGGTTTGCAGTGGCCTGGCCTATTTCATATCCTAGCATCTAGGCCCGGTGGACCA CCATATGTCCGCTTGACGGGGCTGGGGACTTCCACGGAGGCTCTTGAAGCAACTGGGAAACGTTTGTCTGACTTTGCAAACAAACTGGGACTTCCCTTCG AGTTCATTCCAGTGGCCGAAAAAGTTGGAAATTTGAACCCAGAGAGGCTTAATGTTAGCAAGAGTGAGGCTGTTGCCGTCCACTGGTTGCAACACTCGCT CTACGATGTCACTGGTTCCGATACAAATATGCTTTATCTGCTGCAAAGGTTGGCACCAAAAGTAGTGACAGTGGTGGAACAGGACCTGAGCCATGCGGGA TCCTTCCTGGGAAGGTTTGTGGAGGCCGTACATTACTATTCCGCACTGTTCGACTCCTTGGGAGCAAGCTACGGGGAAGAGAGCGAGGAGAGGCATGTAG TGGAACAGCAGTTGCTATCGAGAGAGATACGCAATGTATTGGCTGTGGGAGGGCCTTCCAGAAGTGGGGATGTCAAGTTCCACAACTGGAGGGAAAAGCT TCAACAGTCTGGGTTCAAATGCATCTCTCTTGCTGGAAATGCTGCTAACCAGGCCAATTTGCTACTTGGCATGTTTCCCTCTGATGGTTATACATTAGCA GAGGATAAGGGCACCCTCAAGCTTGGGTGGAAAGACCTTTGCTTGCTCACCGCTTCAGCCTGGAGACCTTTCCATGTTAGTATTGAAACTGCTACTACCA CCATCAACCACCACCACCACCACCACCGCTTTGTCACAGCCTAG
AA sequence Show only first row Show all	>Potri.006G114200.1 pacid=42766918 polypeptide=Potri.006G114200.1.p locus=Potri.006G114200 ID=Potri.006G114200.1.v4.1 annot-version=v4.1 MAAAASYLLGRLSNDNISINNITIDNSGGSCSNIDNASTASLTSASLLTNGGNQATTIPVIEAATGRMVRKRMASEMMEVQSTMTPLNQRLSRGNTNVYS LSISDNNNDDVIGMTRGIGASSFTSCSNNNINPNNLNPILYPLLNYSTMTSMLPSSTNLTAITSAGSASVSVSGFLSSTPSTNLATSCNDNQSQLPAVCG FSGLPLFPPERERNIVRSNAVPPPGLITTSSASTPTPPSMEDAAPATAWIDGIIKDLLHSSTNVSVPQLIQNVREIIYPCNPNLASLLEYRLRSLTDPII PANIYPVERRRNKEAAAVPLPFQRNYIQGHAPSGLSLDLDHVSNSALPPVSSHVVSHYSNWGPTPPLICQPNIQQQHQQPQAHLVHDQQQQESPSSTSNV TPTILALNQGHPPQQAQDQQQEKSSSAETQVASSTPPPSSSVAASRDKKEEMRQQKRNEEGLHLLTLLLQCAEAVSADNFEEANKMLLEISELSTPFGTS AQRVAAYFSEAMSARLVSSCLGIYATLPSMPQSHTQKMASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGP PYVRLTGLGTSTEALEATGKRLSDFANKLGLPFEFIPVAEKVGNLNPERLNVSKSEAVAVHWLQHSLYDVTGSDTNMLYLLQRLAPKVVTVVEQDLSHAG SFLGRFVEAVHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQQSGFKCISLAGNAANQANLLLGMFPSDGYTLA EDKGTLKLGWKDLCLLTASAWRPFHVSIETATTTINHHHHHHRFVTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.006G114200 [exp]	0	1
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	3.16	0.9327
AT1G76770			HSP20-like chaperones superfam...		Potri.005G192700 [exp]	3.46	0.9311
AT3G49810			ARM repeat superfamily protein...		Potri.014G014300 [exp]	5.29	0.9300
AT5G45540			Protein of unknown function (D...		Potri.007G123100 [exp]	5.65	0.9166
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.015G041300 [exp]	8.36	0.9298
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	13.85	0.9285
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.004G030600 [exp]	15.23	0.8739
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.001G097901 [exp]	15.65	0.9071
AT1G68180			RING/U-box superfamily protein...		Potri.015G127600 [exp]	15.81	0.9110
AT2G44830			Protein kinase superfamily pro...		Potri.014G047500 [exp]	16.61	0.9004

Compare expression of checked genes

Potri.006G114200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.