Plant FIBer expression Database

Potri.006G119500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03555 658 / 0 permease, cytosine/purines, uracil, thiamine, allantoin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014397
[exp]
648 / 0 AT5G03555 698 / 0.0 permease, cytosine/purines, uracil, thiamine, allantoin family protein (.1)
Lus10023889
[exp]
108 / 6e-28 AT5G03555 119 / 1e-32 permease, cytosine/purines, uracil, thiamine, allantoin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF02133 Transp_cyt_pur Permease for cytosine/purines, uracil, thiamine, allantoin
Representative CDS sequence
>Potri.006G119500.1 pacid=42768212 polypeptide=Potri.006G119500.1.p locus=Potri.006G119500 ID=Potri.006G119500.1.v4.1 annot-version=v4.1
ATGGTGTCCAAATGTTTCAGCCTCCATCTCCATCCCCACCTCTCTTCCACCTCTTTAATCACCAAAAACTCAAGACTTTCTCTATCTTCGACCACAAAAC
TAAATGCAACACGTATCCAAAAGCAAGTTCACCCTTTCCTTCCAGCAAGAAGATACTCCAGGTTGACCCCAATGGCATCAAGCCAATCCTCAAGAAATGA
TCCAAAACTTGACCAATTCGAGCCCGATCCAACACTTACGAATGATGATCTCAAACCAACAACACCTGCTGAACGGACATATTCCGGCTGGGAAATGGCT
AGTCTATGGATTGGTCTTGTTGTGGGTGTGCCGTCATATTACTTGGCAGGTAGTCTTGTTGACCTTGGCATGGCATGGTGGCAAGGAATTGCAACAGTTG
TTGCTGCCAACATAATCCTACTAGTCCCATTAATCTTAACAGGTCATCCAGGCACACGTTACGGCATCTCTTTCCCGGTCTTGGCAAGATCTTCTTTTGG
AATTCGCGGTGCGCACATTCCTACTCTACTTAGAGCATTGGTTGGTTGTGGCTGGTATGGTATCGAGACTTGGATTGGTGGTGAGGCAATTTTCATTCTT
CTACCACAATTCATCAAAGAAAATTCTTCGTGTTCTCAGTCCTTACCTTGGCTTGGCACTTCTCCATTAGAATTTGCTTGCTTTATTGTTTTCTGGGTAG
CTCAATTGGCTATAGTTTGGAAGGGAATGGATGGAATTAGAGAGCTTGAGAAGTTCTCTGCTCCCATTTTAATCATACTCACTTCTTGTTTGCTCATTTG
GGCTTATGTGAAAGCCGGTGGTTTTGGTTACATGCTCTCTATTTCCTCTAGGTTGTCTTCATCTGAGTTTTGGGCTCTGTTCTTTCCTTCCCTTACCGCA
AATATAAGTTTCTGGGCTACTCTTGCACTTAACATACCAGATTTTACTCGATATGCCAAGAGCCAAACTGATCAGATTATTGGCCATGCTGGTCTTCCAA
TTTTCATGGGAGCATTTACATTTGTTGGCCTAGCTGTAACCTTATCTACCAAAGTGATTTTTGGCCATGTGATATCTAGTCCAATCCAGCTCCTTGAGCG
AATCGGAGGGCTCACAACAATGATCTTAGCTATCTTTGGAATTAGCCTAGCCACCATCACAACAAACATTGCTGCCAATGTTGTAGCACCTGCCAATGCT
CTTGTAAATCTCAGCCCTTCAAAGTTCACATTTAGGAGAGGTGCTCTTTTAACTGCATTGCTTGGTATTGCTTTTCAGCCTTGGAGGCTTCTGCAATCAA
GCGAGAGTTTTGTATATACTTGGCTAGTTGGCTACTCGGCTCTCTTGGGCCCAATCGGGGGCATAGTTTTAGCAGATTATTATCTTATTCGAAAGACTGA
TTTGAGTGTCAATGACTTGTATTCTTTGAGTCCTTATGGGGCATACTATTATTCAGGGGGTTATAATTTGGCCGCAATGGCAGCTCTTATTGCTGGGATT
TTGCCAGTAATACCAGGTTTCCTGCAGAATGTTGGAGTTGTTTCTAGTATTCCAGAGACTTTCGTGGTCATCTACAATAATGCTTGGTTTTTTAGCTTTT
TCTTGGCAGGTTTTCTGTATTGGTCTGTTTCCGTTCTAACAGGAAAACGGAAGAAGTCGCTACCTAGAGATCCCCTCTTGCCAAGTGAAACCTGA
AA sequence
>Potri.006G119500.1 pacid=42768212 polypeptide=Potri.006G119500.1.p locus=Potri.006G119500 ID=Potri.006G119500.1.v4.1 annot-version=v4.1
MVSKCFSLHLHPHLSSTSLITKNSRLSLSSTTKLNATRIQKQVHPFLPARRYSRLTPMASSQSSRNDPKLDQFEPDPTLTNDDLKPTTPAERTYSGWEMA
SLWIGLVVGVPSYYLAGSLVDLGMAWWQGIATVVAANIILLVPLILTGHPGTRYGISFPVLARSSFGIRGAHIPTLLRALVGCGWYGIETWIGGEAIFIL
LPQFIKENSSCSQSLPWLGTSPLEFACFIVFWVAQLAIVWKGMDGIRELEKFSAPILIILTSCLLIWAYVKAGGFGYMLSISSRLSSSEFWALFFPSLTA
NISFWATLALNIPDFTRYAKSQTDQIIGHAGLPIFMGAFTFVGLAVTLSTKVIFGHVISSPIQLLERIGGLTTMILAIFGISLATITTNIAANVVAPANA
LVNLSPSKFTFRRGALLTALLGIAFQPWRLLQSSESFVYTWLVGYSALLGPIGGIVLADYYLIRKTDLSVNDLYSLSPYGAYYYSGGYNLAAMAALIAGI
LPVIPGFLQNVGVVSSIPETFVVIYNNAWFFSFFLAGFLYWSVSVLTGKRKKSLPRDPLLPSET

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03555 permease, cytosine/purines, ur... Potri.006G119500
[exp]
0 1
AT2G37710 RLK receptor lectin kinase (.1) Potri.006G088632
[exp]
2.44 0.9587
AT3G53810 Concanavalin A-like lectin pro... Potri.006G088801
[exp]
3.00 0.9576
AT2G37710 RLK receptor lectin kinase (.1) Potri.006G088400
[exp]
4.89 0.9530
AT3G10670 ABCI6, ATNAP7 ATP-binding cassette I6, non-i... Potri.008G012500
[exp]
5.65 0.9593 NAP7.2
AT1G79870 D-isomer specific 2-hydroxyaci... Potri.003G052700
[exp]
6.00 0.9544
AT1G08280 Glycosyltransferase family 29 ... Potri.009G144000
[exp]
6.24 0.9520
AT5G59030 COPT1 copper transporter 1 (.1) Potri.009G038800
[exp]
6.78 0.9472 COPT1.2
AT5G43060 Granulin repeat cysteine prote... Potri.007G047600
[exp]
7.07 0.9526
AT3G54360 zinc ion binding (.1) Potri.003G189400
[exp]
13.67 0.9525
AT4G27600 NARA5 GENES NECESSARY FOR THE ACHIE... Potri.013G078600
[exp]
16.70 0.9529

Potri.006G119500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.