Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53200 182 / 3e-57 MYB ATMYB27 myb domain protein 27 (.1) AT5G59780 152 / 1e-45 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT3G46130 152 / 2e-45 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT3G24310 146 / 6e-43 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT4G13480 141 / 3e-41 MYB ATMYB79 myb domain protein 79 (.1) AT3G30210 140 / 1e-40 MYB ATMYB121 myb domain protein 121 (.1) AT4G38620 139 / 4e-40 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 138 / 8e-40 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT2G47190 137 / 1e-39 MYB AtMYB2 myb domain protein 2 (.1) AT5G07690 139 / 2e-39 MYB PMG2, ATMYB29 PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2, myb domain protein 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235500 [exp] 155 / 1e-46 AT3G46130 276 / 3e-94 myb domain protein 48 (.1.2.3.4) Potri.009G027300 [exp] 153 / 6e-46 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4) Potri.010G064000 [exp] 145 / 6e-43 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.004G118000 [exp] 142 / 7e-42 AT3G30210 209 / 1e-67 myb domain protein 121 (.1) Potri.004G115600 [exp] 141 / 7e-42 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.008G173400 [exp] 142 / 1e-41 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.013G148600 [exp] 143 / 9e-41 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.001G408700 [exp] 142 / 1e-40 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.017G071500 [exp] 138 / 1e-40 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023918 [exp] 196 / 6e-63 AT3G53200 172 / 1e-53 myb domain protein 27 (.1) Lus10014415 [exp] 184 / 3e-58 AT3G53200 174 / 3e-54 myb domain protein 27 (.1) Lus10005886 [exp] 157 / 1e-47 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10023711 [exp] 146 / 2e-42 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10014453 [exp] 143 / 2e-41 AT3G24310 240 / 1e-78 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10033473 [exp] 136 / 2e-39 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10038062 [exp] 137 / 3e-39 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10039743 [exp] 135 / 5e-39 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10000411 [exp] 136 / 6e-39 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10038395 [exp] 136 / 6e-39 AT3G12720 233 / 2e-75 myb domain protein 67 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G122100.1 pacid=42767134 polypeptide=Potri.006G122100.1.p locus=Potri.006G122100 ID=Potri.006G122100.1.v4.1 annot-version=v4.1 ATGGCTTGTCAAGGAGACAAATTGCGTAAAGGGTCTTGGCAGGAGGAGGAAGATGAGCGATTAACAGCTTCTGCAACTCTTTTAGGAGAACGAAAGTGGG ACTCCATAGCAAGATTATCTGGTCTGATGAGGAGCGGTAAGAGTTGCAGAATGAGGTGGCTGAACTACCTTCAACCCAATCTTAAGCGCGGTCATATAAG TGCTGAAGAAGAGCAGATTATTATTCAATTTCATGGGCAATGGGGTAACAAATGGGCAAGGATTGCTCGAAGGTTGCCCGGTAGAACTGACAATGAGATC AAGAACTACTGGAGAACTCATATGAGAAAGGAAATACAAACCGAAGAAGAAGGAAATTTTCAGCCCAAAGTTTACAGTGCCAAACCAGAGTTGCTGTATC AAAATGGCGACAGTACTAGTGCCTGGAAATATAGCATCAGAGACTACAACTCTGTTGATGATAATATCGGACCCGCAGGCTCTTCCTTGGAACATTATGA GTTACCAAGCCTGACACACATGAACTCACCATATGAGACCAGGCAATATGATTGGATTCCAAAGTTGTCCAATGATCAGAGTCAAACAGAAGTTCATGGG GAGGGTAATGGTTTAGACTGGTGTTTCTGTGATCCAGCTTGGAACTCTGAAGATAGTGACATTAGCACATTGGTCTCTTTGGGTTCTCTCTGGGATATGA ATTGA
AA sequence Show only first row Show all	>Potri.006G122100.1 pacid=42767134 polypeptide=Potri.006G122100.1.p locus=Potri.006G122100 ID=Potri.006G122100.1.v4.1 annot-version=v4.1 MACQGDKLRKGSWQEEEDERLTASATLLGERKWDSIARLSGLMRSGKSCRMRWLNYLQPNLKRGHISAEEEQIIIQFHGQWGNKWARIARRLPGRTDNEI KNYWRTHMRKEIQTEEEGNFQPKVYSAKPELLYQNGDSTSAWKYSIRDYNSVDDNIGPAGSSLEHYELPSLTHMNSPYETRQYDWIPKLSNDQSQTEVHG EGNGLDWCFCDPAWNSEDSDISTLVSLGSLWDMN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Potri.006G122100 [exp]	0	1
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Potri.001G068300 [exp]	10.95	0.9537
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.002G139400 [exp]	13.56	0.9500
AT3G52155			Phosphoglycerate mutase family...		Potri.006G000600 [exp]	14.49	0.9459
AT3G06950			Pseudouridine synthase family ...		Potri.008G206200 [exp]	14.59	0.9489
AT2G47485			unknown protein		Potri.002G200000 [exp]	16.73	0.9470
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.003G191000 [exp]	20.12	0.9462
AT2G37920		EMB1513	embryo defective 1513, copper ...		Potri.006G092100 [exp]	21.97	0.9455
AT1G76730			NagB/RpiA/CoA transferase-like...		Potri.005G194800 [exp]	22.80	0.9444
AT5G43140			Peroxisomal membrane 22 kDa (M...		Potri.014G017800 [exp]	25.78	0.9144
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.002G169300 [exp]	27.98	0.9440

Compare expression of checked genes

Potri.006G122100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.