Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57620 233 / 2e-74 MYB ATMYB36 myb domain protein 36 (.1) AT2G36890 229 / 1e-73 MYB BIT1, ATMYB38, RAX2 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) AT3G49690 229 / 1e-73 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT5G65790 231 / 4e-73 MYB AtMYB68 myb domain protein 68 (.1) AT5G23000 218 / 8e-69 MYB ATMYB37, RAX1 REGULATOR OF AXILLARY MERISTEMS 1, myb domain protein 37 (.1) AT4G37780 217 / 1e-68 MYB ATMYB87 myb domain protein 87 (.1) AT5G56110 180 / 3e-54 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT5G15310 174 / 6e-52 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G02940 172 / 5e-51 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 171 / 1e-50 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G099200 [exp] 461 / 2e-164 AT5G57620 234 / 3e-75 myb domain protein 36 (.1) Potri.009G007100 [exp] 306 / 4e-103 AT5G57620 239 / 5e-77 myb domain protein 36 (.1) Potri.004G215100 [exp] 298 / 5e-100 AT5G57620 240 / 2e-77 myb domain protein 36 (.1) Potri.002G113700 [exp] 235 / 4e-75 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.007G007900 [exp] 231 / 1e-73 AT3G49690 253 / 1e-82 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.018G095900 [exp] 229 / 7e-73 AT5G57620 275 / 2e-90 myb domain protein 36 (.1) Potri.006G234200 [exp] 227 / 2e-72 AT3G49690 232 / 7e-75 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.006G170800 [exp] 226 / 1e-71 AT5G57620 268 / 5e-88 myb domain protein 36 (.1) Potri.018G058800 [exp] 219 / 6e-70 AT3G49690 224 / 1e-72 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013830 [exp] 270 / 4e-89 AT5G57620 236 / 1e-75 myb domain protein 36 (.1) Lus10026543 [exp] 246 / 9e-80 AT2G36890 234 / 6e-75 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) Lus10016139 [exp] 245 / 2e-79 AT5G57620 236 / 6e-76 myb domain protein 36 (.1) Lus10021428 [exp] 243 / 1e-78 AT5G57620 248 / 2e-80 myb domain protein 36 (.1) Lus10028248 [exp] 236 / 2e-75 AT5G65790 253 / 2e-82 myb domain protein 68 (.1) Lus10007248 [exp] 234 / 3e-74 AT5G57620 259 / 3e-84 myb domain protein 36 (.1) Lus10011606 [exp] 233 / 6e-74 AT5G57620 245 / 3e-79 myb domain protein 36 (.1) Lus10001394 [exp] 229 / 1e-73 AT5G57620 236 / 2e-76 myb domain protein 36 (.1) Lus10039646 [exp] 231 / 2e-73 AT5G57620 244 / 6e-79 myb domain protein 36 (.1) Lus10001316 [exp] 229 / 3e-73 AT5G57620 280 / 2e-93 myb domain protein 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G123400.1 pacid=42767063 polypeptide=Potri.006G123400.1.p locus=Potri.006G123400 ID=Potri.006G123400.1.v4.1 annot-version=v4.1 ATGGGAAGGGCTCCTTGTTGTGACAAGGCTAATATGAAGAAAGGGCCTTGGTCGCCTGAAGAAGATGCAAAGCTGAAGGAGTACTTGGAAAAACAAGGGA CTGGAGGGAATTGGATTGCTCTCCCACAAAAGGCTGGTCTTAAAAGATGTGGGAAAAGCTGCAGATTAAGATGGCTAAACTATCTCAGGCCCAACATTAA ACATGGAGAGTTCTCTGATGATGAAGACAGGATAATCTGCAGCCTATATGCCAACATTGGAAGCCGGTGGTCAATAATAGCAGCTCAGTTGCCAGGCAGG ACGGATAATGACATCAAAAACTACTGGAACACCAAGCTCAAGAAGAAACTAATGGGTGTGATGAATCCTATTGCTCAGAGAAAACCTCACCAAGCTGCTC TTTTTTCATCTCTCCTTCAAGCTACATCATTACCGTCTTCACCATCCACTCTCCTGTCATCATCATCATCATCATTCACATGCAGCAACAACAGTTATTA CAGTAACCTAACTAGGTCTTTCACTGATCCAATCTCATTTTCATCAAGTCCTATGAGCACTAGCTCTTTCGCTACTGCTTCTATGCTACACCCCCAAGAA ACCTTTGTGGGGCCTATGCAAAATGATCAAGTTAAAGATAGTCTTATAATGTTTGGAGGTGAAGCCAGCTGCAGCTCGTCTGATGGGAGTTGCAACAATC AGATGAGCCATGTCAAAGAGGAGTATGAATATAGTGGTGGTACAAATAACAACAATGAACAGATGGGGTTACAAAATTATCTCTACAATGGGGTTGAAGA TGACCAAAAATTGATGGTTTCAAGTGGGGCTGCTGCTCATGGTGTACTTAATGGGTGGATTGAGAAGCAAAATGGGTTATGGCCGGGAGATAACCCACTA GACTATGGTCTAGAGGAGATTAAGCAACTTATTAGCACTAGCAGCTGTAATAGCTTTTTGTTTGATGAAAACAAGACAGGAGAAAAAGTCATGTACTACT GA
AA sequence Show only first row Show all	>Potri.006G123400.1 pacid=42767063 polypeptide=Potri.006G123400.1.p locus=Potri.006G123400 ID=Potri.006G123400.1.v4.1 annot-version=v4.1 MGRAPCCDKANMKKGPWSPEEDAKLKEYLEKQGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICSLYANIGSRWSIIAAQLPGR TDNDIKNYWNTKLKKKLMGVMNPIAQRKPHQAALFSSLLQATSLPSSPSTLLSSSSSSFTCSNNSYYSNLTRSFTDPISFSSSPMSTSSFATASMLHPQE TFVGPMQNDQVKDSLIMFGGEASCSSSDGSCNNQMSHVKEEYEYSGGTNNNNEQMGLQNYLYNGVEDDQKLMVSSGAAAHGVLNGWIEKQNGLWPGDNPL DYGLEEIKQLISTSSCNSFLFDENKTGEKVMYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G123400 [exp]	0	1
AT1G56140			Leucine-rich repeat transmembr...		Potri.001G082900 [exp]	1.00	0.9816
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	1.41	0.9804
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.008G164466 [exp]	1.73	0.9768
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.015G148200 [exp]	2.82	0.9762
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	3.16	0.9756
AT2G03830		RGF8	root meristem growth factor 8,...		Potri.010G138001 [exp]	3.46	0.9744
AT5G43120			ARM-repeat/Tetratricopeptide r...		Potri.007G052300 [exp]	3.87	0.9608
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Potri.014G020700 [exp]	4.35	0.9593
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.004G185100 [exp]	4.89	0.9699
AT3G18180			Glycosyltransferase family 61 ...		Potri.015G042200 [exp]	5.19	0.9692

Compare expression of checked genes

Potri.006G123400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.