Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TKI1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36960 681 / 0 MYB TKI1 TSL-kinase interacting protein 1 (.1.2.3) AT4G39380 127 / 9e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091700 [exp] 1369 / 0 AT2G36960 665 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Potri.007G077700 [exp] 176 / 3e-48 AT4G39380 245 / 2e-76 unknown protein Potri.005G086800 [exp] 175 / 5e-48 AT4G39380 245 / 2e-76 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013816 [exp] 919 / 0 AT2G36960 660 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Lus10026528 [exp] 763 / 0 AT2G36960 526 / 4e-178 TSL-kinase interacting protein 1 (.1.2.3) Lus10033530 [exp] 160 / 2e-42 AT4G39380 216 / 2e-64 unknown protein Lus10010230 [exp] 109 / 5e-28 AT2G36960 68 / 2e-14 TSL-kinase interacting protein 1 (.1.2.3) Lus10020841 [exp] 48 / 1e-05 AT4G39380 99 / 1e-23 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G125400.6 pacid=42770007 polypeptide=Potri.006G125400.6.p locus=Potri.006G125400 ID=Potri.006G125400.6.v4.1 annot-version=v4.1 ATGGAGCCACAAGTCTCCTTGGACTCTGAGCGACATCTTCATCGAAACAGTTCAATTCAGGTCGGAGATCCTGGTGTAACATCATCTACTCCAGATCGTG TTGAGCCACGGCAGCCAGAGAAAAGACCAACACGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAAGTTTCTTCAATGCACTACGACAAGTTGGCAA GAACTTTGAGAAAATTACTCGCCATGTTCAAAGTAAAAACAAGGATCAGGTCAGGCATTATTACTATCGTCTTGTGAGGCGTATGAACAAATTGCTGGGC CCAGGATTGTGCCTAGATGCAAAAAACTCAAAAGATACAAACGCTGCAATGCTCCGATGGTGGTCATTATTGGCAAAGTATAGTTGCAAAGCTTCAAAGC TCCATCTAAAACCGCGAAGGTTTAAGATATTTGTAGAAGCACTGGAAAACCAACTCTTGAAAGATCGAAGGAAGAATGTTAGGAAACGGTCTTCACAAGG GGAAAATGGCTCTCCAACAACTCCTAGCATTATCACAAATCAGAATAGAGCATCTGGGCATGATACTCGAACTGTTAAACTTGTTCTTGTTGATAGTCAA AACATACAAAAATTAGGTGGTGGAAAGGGATCATTGAAGCGCAATGTTAATTTGGGGGTTATCCGTAACAACAATAAAGGAGACTCAACTGCAATGAAAC CTGCAAGGCAAAGGCGGAAACCAGCCTCATCAGCGGCATACAAAAAATGGGAAAAGGCTGCAATTGCTGGGGTTTCTTTGGTTGCTGATGCTGCCGAGCA TTTGGAACGGACAGCCCCTGATAAAGAGTTTGAACATGACCAAGGGCAAAATGGTCTTGATTCTGTTGAAAACGTTCTGCCCCATTTGCCTGCTTCTTTG CTTCATTATGTTGAAAGCAGTGCACACAATAATATGAAGCTTAAGCTCCAGTTGTTCCCAATTGATGATGGTACTCGTAGAGCCTTAGAAATGGATAAGC ATAATCCACACCTGGAACTCACTCTTAGTACTCGGAAAAAGATATCATCAGTACTGGAACATCTAAATCGGAAATGGGGCAATTCTACTGTTGCATCTGG AGAGCTAATGCTTTTCCCTTACGTAGTTAATAGAGAAAACCTGGTGGGTTATCAGAGATGGACACAGGACTCACTTGTCAGTGCAGCCGATGTATACCTT TCAATTGGCAGCCCTCCAGTGTTTCGCTTGAGGTATGGCTGGTTTTCCAACGCCAACTTTGCTTCTATGACATTGCGAGCACCTTCAACGTATAGTTGCC TTACAGATGGAGGAAATGAGAAAGGGAAGGCTATGGATTCTGTATCCACAACTGAGCCATCAACTGGTGATCAGTTTCTTGAGGATCCCAGTAGGGATTG CCCGACTTCCATGAACAGTAATCATGCTTCTACACCTCATTCTGCAGGAGTGAGCAATGAGACAAATGAGTTTATTGCCATAGGACCCATAAATAATCTT GTCAAGTCCTTTGATCCTGCAGCAAACACATCCTGGCATAGAACAGAGACTGATGATAGGACTAGCACACAACAATTGGAAGATGTGGATGGCTTGCGAT TGAGCAATGTAAATGTGCTGTCTGCTGGGGAGTGGGCTGATAGCCTTACTGATGTTAGCATTGGAGATCTACTATCAGAGTTGCCTCATGAAGCAGATTT TAACTGCGTTGAACCTCCTATTGTTCAAAGCAATCAATGCCTTCAGCAGATCCCATTCAGCTGTGATTCATTTGATGCGGCAATTGCTGCACATATCTCA AGGCATCAAAGCAAAGTGGGATTTGTTTCCTCAGTGACATCCCATACATCTTCAATCTGGGATGGTGAAGAAACATGTGATGCCTTTGCTTTTCAAAGGA ATCATTCTCTCCGCAAGGAAGTTACTACATCTGCTGTTGCTTCTCCACAGGTTGGCAAACAGATGGACAGGACAAGCTCAATCGCATCCGGTGCCTTTCT TGAGGAGCTACCTGATTTTGTGGGTCCTATGGATTATCCTACTGGTGAAGACCGTATGTGTCTGTCTGATTTGCAAGTCGTGAACAACCAAGCAAAGAAT TTCAATGGGCTAACAGATATCTATTGGCCTGACTCGTTAGGGCTATTAGATCTGGATATACCATCCTCCAAATACCATGCTGAAGATTTGATTTTAAGTG ATAGCCTTGGTGGTTTGAACCATCTGATAGCCAGCAGCTTGGATGCATTTCAAAATTGCTCCTTTTTTGGGCTGAACAAGAAAGATTCGACTTCAACAGT TGAAGCTCGAGAAACAACCTCATTTTCAGATTTTAAAATCGGCAGCGGGATTTGA
AA sequence Show only first row Show all	>Potri.006G125400.6 pacid=42770007 polypeptide=Potri.006G125400.6.p locus=Potri.006G125400 ID=Potri.006G125400.6.v4.1 annot-version=v4.1 MEPQVSLDSERHLHRNSSIQVGDPGVTSSTPDRVEPRQPEKRPTRQWAAWTHQEEESFFNALRQVGKNFEKITRHVQSKNKDQVRHYYYRLVRRMNKLLG PGLCLDAKNSKDTNAAMLRWWSLLAKYSCKASKLHLKPRRFKIFVEALENQLLKDRRKNVRKRSSQGENGSPTTPSIITNQNRASGHDTRTVKLVLVDSQ NIQKLGGGKGSLKRNVNLGVIRNNNKGDSTAMKPARQRRKPASSAAYKKWEKAAIAGVSLVADAAEHLERTAPDKEFEHDQGQNGLDSVENVLPHLPASL LHYVESSAHNNMKLKLQLFPIDDGTRRALEMDKHNPHLELTLSTRKKISSVLEHLNRKWGNSTVASGELMLFPYVVNRENLVGYQRWTQDSLVSAADVYL SIGSPPVFRLRYGWFSNANFASMTLRAPSTYSCLTDGGNEKGKAMDSVSTTEPSTGDQFLEDPSRDCPTSMNSNHASTPHSAGVSNETNEFIAIGPINNL VKSFDPAANTSWHRTETDDRTSTQQLEDVDGLRLSNVNVLSAGEWADSLTDVSIGDLLSELPHEADFNCVEPPIVQSNQCLQQIPFSCDSFDAAIAAHIS RHQSKVGFVSSVTSHTSSIWDGEETCDAFAFQRNHSLRKEVTTSAVASPQVGKQMDRTSSIASGAFLEELPDFVGPMDYPTGEDRMCLSDLQVVNNQAKN FNGLTDIYWPDSLGLLDLDIPSSKYHAEDLILSDSLGGLNHLIASSLDAFQNCSFFGLNKKDSTSTVEARETTSFSDFKIGSGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.006G125400 [exp]	0	1	Pt-TKI1.2
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	3.87	0.7222
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Potri.012G022800 [exp]	5.29	0.6874
AT5G03820			GDSL-like Lipase/Acylhydrolase...		Potri.006G118300 [exp]	9.59	0.7839
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.010G100500 [exp]	18.38	0.7535
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.011G053400 [exp]	22.24	0.6827
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	30.00	0.6365	Pt-GPA1.2
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138700 [exp]	30.88	0.6732
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034300 [exp]	36.46	0.6827
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.014G152200 [exp]	36.56	0.5564
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G119200 [exp]	39.59	0.6114

Compare expression of checked genes

Potri.006G125400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.