Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37025 120 / 2e-29 TRFL8 TRF-like 8 (.1.2) AT1G72650 97 / 5e-21 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 85 / 5e-17 MYB TRFL3 TRF-like 3 (.1.2) AT3G46590 55 / 9e-08 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT3G53790 54 / 2e-07 MYB TRFL4 TRF-like 4 (.1) AT5G13820 54 / 2e-07 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT1G07540 53 / 3e-07 MYB TRFL2 TRF-like 2 (.1) AT3G12560 53 / 4e-07 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT5G59430 51 / 2e-06 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT1G15720 49 / 5e-06 MYB TRFL5 TRF-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170200 [exp] 100 / 9e-22 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.003G063700 [exp] 97 / 4e-21 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.006G086500 [exp] 54 / 2e-07 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.010G202400 [exp] 53 / 4e-07 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.001G241600 [exp] 53 / 4e-07 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.009G032000 [exp] 52 / 6e-07 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.008G057300 [exp] 52 / 7e-07 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.006G147400 [exp] 51 / 7e-07 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.018G066300 [exp] 46 / 3e-05 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013809 [exp] 100 / 2e-24 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 100 / 3e-22 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2) Lus10015664 [exp] 96 / 9e-21 AT1G72650 335 / 9e-107 TRF-like 6 (.1.2) Lus10037678 [exp] 96 / 1e-20 AT1G72650 341 / 2e-109 TRF-like 6 (.1.2) Lus10000947 [exp] 57 / 4e-08 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10002704 [exp] 57 / 4e-08 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040285 [exp] 56 / 5e-08 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10010844 [exp] 54 / 3e-07 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10024385 [exp] 54 / 3e-07 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10020771 [exp] 52 / 1e-06 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G126300.9 pacid=42767667 polypeptide=Potri.006G126300.9.p locus=Potri.006G126300 ID=Potri.006G126300.9.v4.1 annot-version=v4.1 ATGCCTAGGATGGATGGGTTGGATCGAGAAGCGCATTTTCCGAAGAAGTTTGCTAGTATGAAATGTCAAAGGGTAAAGGTAGATGATTCCTTTGCTCCTG CATTAGAAGATGAAGCAATTGAAGTACAGCACTTAGTTGCGGAACCTAAAACTGATCATGTTTCAGTAGACGGTGTGTTATGTTTGGGCAAGGAGAATTC ATCAAAATGCTCAGAGACAGATGGTTTTTCATATGGATTTAATGATGGCATGAGAAAAAATATTGGTGGGCTGCATTCAAATATTACTCAAGGACCAGAT GACTTGGATCTTGGAGTTCTTGATGGATTCCTGGATGAAGTTGATGAGGTGGATGATATTCATGCAGCTAATGATTTCTCCGGGGCATATGAAGATTTTA TTTTGGATATTGAATTAGCTGAGAAGGTGTCTTACCTGGATTATACTCCACGTGGAGGATCACGGTTAAGAAACTCGAGTTCAGAAAGTCAATCCCCTGG ATGCAGTGGAAGTAGTAATGGTGCTGTTGGGATGTCAGAATCGTCAACAGCAACTATTCCAAAATTTGAAAGCAAAAATGGTTGGCATCAAAAGACAGTC AAATGTAAATTACGTTGCTCTTCTGGTGACAAATGGAATAGTCAAGAACCAGGTGAGGATAGTATGTGCCCCACTTCAGATGATATAGAGGATCTTGATG AGTTGGATGATGATGCAAAGCCTTTGATAAGTCTCGTATCTGGTAAAAATGCAAAGAAAGTTGTTCAAGCTGCCAAAGCTGGTACATCAGTCAGACAGAA GAGGTTGCGTAAGCCTACAAAGAGGTACATTGAAGAACTTTCAGATCCCAAGGCAAAACATGTGATGGAAAGAAAAAGTTATTTGTCTGCCACTTTGAAG GATAAACGCCCAAAGATCAGATCTCATGATGAACTTCATAGTGGGGGAGCATTGACATGTACTCCCAAGGAGCCTTTTAGTGAGAATATTACTCAAGCAA CATCTAAAGGCACTGATGAACCTTTACATCTAAGGTCAAAGCCTGTCTCTGAAAGACGAACAAATCCTTCATTTATTTCAAAGGGTAGACGCTGGAGTAT TAGATCTCAGAATGAACCTTATCAAGTGAGAGCAGTGAAATTTGCTCCAAAGGAGTTGTCCTTAACTGGACCCAGTGCTCAAGCACCATTTGAATCCCGA CCACGGAGAGGGCGTCCAAAGAAATCCTTGCCTCTTTCGTTTCTGGAATCCGAAGATGATGAGTCTGAAGATGACTGTGTTAAGAAAAGAACATGTAAGA AGAGCAATGACAGAAGGAAGCATCAAAGAATGTGGACCACTCCTGAGGTGATGAAGTTGATTGATGGTATTGCTCAGTATGGAACTGGAAGGTGGACTGA TATAAAGAAGCTCATGTTCTCATCAACTGCTTACCGAACTCCAATAGATCTGAGGGACAAATGGCGGAATCTTTTAAGAGCTAGCGGCGCACAGAAACGA AAATCAAACAAGAAAGAGGTTAAGGAAAAGCTGAAGGATGTGGTGCGTTCATTACCAAGTTCTGTGTTTCGCCGAGTCCGTGAGCTAGCTTCCCTTCATC CATATCCAAGGTTTAGTCCTGGTGGGAGATACATCCGCAGGAAGAACTGA
AA sequence Show only first row Show all	>Potri.006G126300.9 pacid=42767667 polypeptide=Potri.006G126300.9.p locus=Potri.006G126300 ID=Potri.006G126300.9.v4.1 annot-version=v4.1 MPRMDGLDREAHFPKKFASMKCQRVKVDDSFAPALEDEAIEVQHLVAEPKTDHVSVDGVLCLGKENSSKCSETDGFSYGFNDGMRKNIGGLHSNITQGPD DLDLGVLDGFLDEVDEVDDIHAANDFSGAYEDFILDIELAEKVSYLDYTPRGGSRLRNSSSESQSPGCSGSSNGAVGMSESSTATIPKFESKNGWHQKTV KCKLRCSSGDKWNSQEPGEDSMCPTSDDIEDLDELDDDAKPLISLVSGKNAKKVVQAAKAGTSVRQKRLRKPTKRYIEELSDPKAKHVMERKSYLSATLK DKRPKIRSHDELHSGGALTCTPKEPFSENITQATSKGTDEPLHLRSKPVSERRTNPSFISKGRRWSIRSQNEPYQVRAVKFAPKELSLTGPSAQAPFESR PRRGRPKKSLPLSFLESEDDESEDDCVKKRTCKKSNDRRKHQRMWTTPEVMKLIDGIAQYGTGRWTDIKKLMFSSTAYRTPIDLRDKWRNLLRASGAQKR KSNKKEVKEKLKDVVRSLPSSVFRRVRELASLHPYPRFSPGGRYIRRKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Potri.006G126300 [exp]	0	1
AT5G53620			unknown protein		Potri.012G023200 [exp]	4.89	0.7486
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.004G069200 [exp]	6.24	0.7320
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Potri.002G069800 [exp]	6.32	0.7065
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044200 [exp]	19.64	0.7375
AT4G30100			P-loop containing nucleoside t...		Potri.005G168300 [exp]	26.68	0.7082
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.006G272900 [exp]	29.52	0.7170
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.010G143600 [exp]	36.52	0.6682
AT2G05710		ACO3	aconitase 3 (.1)		Potri.002G229200 [exp]	40.00	0.6950
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G030413 [exp]	41.32	0.7090
					Potri.003G068350 [exp]	52.15	0.6804

Compare expression of checked genes

Potri.006G126300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.