Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28550 308 / 7e-100 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT4G36920 289 / 9e-93 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 273 / 1e-87 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 182 / 2e-51 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT1G51190 163 / 6e-44 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G54990 158 / 6e-44 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2) AT3G20840 161 / 3e-43 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 159 / 2e-42 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 158 / 3e-42 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G72570 155 / 4e-42 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084500 [exp] 693 / 0 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.008G045300 [exp] 318 / 3e-103 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 290 / 8e-92 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 285 / 2e-90 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G216200 [exp] 284 / 4e-90 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.003G205700 [exp] 160 / 4e-43 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 160 / 4e-43 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 161 / 6e-43 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.017G078600 [exp] 156 / 7e-43 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015055 [exp] 357 / 1e-118 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10019905 [exp] 346 / 4e-114 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10026477 [exp] 332 / 1e-110 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10023165 [exp] 337 / 5e-110 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10018124 [exp] 284 / 2e-90 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10041595 [exp] 281 / 9e-90 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 282 / 1e-89 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 281 / 2e-89 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10004990 [exp] 276 / 1e-86 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10036141 [exp] 267 / 1e-83 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.006G132400.1 pacid=42767408 polypeptide=Potri.006G132400.1.p locus=Potri.006G132400 ID=Potri.006G132400.1.v4.1 annot-version=v4.1 ATGATGTTGGATCTTAACTTGAGTGCGGTTTCTGGTGATTCGTCAACGACAGGGAAGAATAATAAGCACAAGCAGAAGAAGATTCTAGAGCTTTCCAACC CTCCACTGGAAAGTTCTGGCAGCTTCGATTCTTCTTCCATAGTCAATGCTGATGGCTGTGGTGATGAGGACTCTTGCTCCAACGGAGACCTTTTTGCCTA CAATTTCAGTATCTTGTCAAATGAAATCAGCGTCAAGAAGACCGTTGATTGTGATAATTATAATAATGATGATGGTGATGACAGTGGAGATCGAACGATC CAGCTTTTTCCAGTTGCGTGTGGGATCAAGAATGTGGGAGGAGAGTCTCAGTCTTCTTCGACGATGCAGATGCAGTGGTCGGGTGTCGGTGAGTGCAGGG ATCAAGGTTCCCCTTCGGAGAACGGGATCGTGGCTCAACAAAAGCCAGTGAAGAAGAGTCGGCGTGGGCCCAGGTCGAGAAGCTCCCAGTATAGAGGAGT CACGTTTTATCGGAGAACTGGAAGATGGGAATCTCATATCTGGGATTGTGGAAAGCAAGTTTACTTGGGGGGATTTGATACTGCACATGCTGCAGCTAGG GTGTATGATCGAGCCGCCATTAAGTTCCGTGGAGTTGACGCTGATATCAACTTTAACGTTACTGATTATGATGAGGATATTAAGCAGATGCGTAATTTCA CAAAGGAAGAATTTGTGCATATCCTACGTCGTCAGAGCACTGGATTCTCGAGGGGCAGCTCAAAATATAGAGGAGTGACGCTGCACAAATGTGGGCGATG GGAGGCTCGTATGGGGCAGTTCCTGGGGAAGAAGTACATTTATCTTGGGCTATTCGATAGCGAGACAGAAGCTGCAAGGGCTTATGACAAGGCTGCCATT AAATGCAATGGAAGGGAAGCAGTTACCAACTTTGAGCCAAGCACGTATGAAGGAGAGATACTTTCTGAGCCTAACAATGGAGACGGCAACCAAAATCTTG ACCTGAACTTGGGAATTGCTCCCCCTGATACATCTGATGGCCTAAAGGTAAACAGCAACATGGGTGGTTTTTATTTCCAGAGTGGCTGGGATGGCTTGTC TATTGATAGGGCACCAAAGATTCTGAACTCTGCTTCTGCAACGATGAAAAATCAACAACCTAATGGCCCTGGAATGACATCTGTACACCCTCCTACGTGG GATGGTGTAAATCATCACATCTTTCCCATCTATGAGGAAAGAGCAATAGAGAAGAGAATGGAAGTAGATTCCTTCCCAAATTGGACCAGGCAAATTCAAG GCCCTTATGGTGGCGGAGCAAATCCACTGCCTCTCTTCTCTACTGCAGCATCATCAGGATTCGCTTCTTCAGCAATTATGGCACCTTCAGCAGCTGCCGG TCAACTTCAGTTTCCAAGTTCCACAATCCTCCACCGTTTTCCTCCATTTACCAACCCCAGCAACATCTCGCAATTCTACTGTAGAAGCTGA
AA sequence Show only first row Show all	>Potri.006G132400.1 pacid=42767408 polypeptide=Potri.006G132400.1.p locus=Potri.006G132400 ID=Potri.006G132400.1.v4.1 annot-version=v4.1 MMLDLNLSAVSGDSSTTGKNNKHKQKKILELSNPPLESSGSFDSSSIVNADGCGDEDSCSNGDLFAYNFSILSNEISVKKTVDCDNYNNDDGDDSGDRTI QLFPVACGIKNVGGESQSSSTMQMQWSGVGECRDQGSPSENGIVAQQKPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAAR VYDRAAIKFRGVDADINFNVTDYDEDIKQMRNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSETEAARAYDKAAI KCNGREAVTNFEPSTYEGEILSEPNNGDGNQNLDLNLGIAPPDTSDGLKVNSNMGGFYFQSGWDGLSIDRAPKILNSASATMKNQQPNGPGMTSVHPPTW DGVNHHIFPIYEERAIEKRMEVDSFPNWTRQIQGPYGGGANPLPLFSTAASSGFASSAIMAPSAAAGQLQFPSSTILHRFPPFTNPSNISQFYCRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.006G132400 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.016G084500 [exp]	1.00	0.8251
AT1G06560			NOL1/NOP2/sun family protein (...		Potri.005G204900 [exp]	4.12	0.7766
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Potri.001G111300 [exp]	13.85	0.8141
AT5G56890			Protein kinase superfamily pro...		Potri.003G039100 [exp]	14.96	0.7771
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Potri.005G065800 [exp]	15.49	0.7581
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	17.54	0.7863
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	18.24	0.7826	XRN2.1
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.001G378900 [exp]	18.81	0.7906
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Potri.001G078600 [exp]	23.87	0.8025
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	27.65	0.7497	ARF6.4

Compare expression of checked genes

Potri.006G132400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.