Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24530 740 / 0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT4G19150 66 / 4e-12 Ankyrin repeat family protein (.1.2) AT2G03430 59 / 1e-09 Ankyrin repeat family protein (.1) AT1G14480 56 / 4e-08 Ankyrin repeat family protein (.1.2) AT5G66055 56 / 5e-08 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT2G28840 55 / 8e-08 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G20350 55 / 1e-07 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT4G27780 54 / 2e-07 ACBP2 acyl-CoA binding protein 2 (.1) AT2G14255 51 / 1e-06 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G40160 50 / 2e-06 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081000 [exp] 924 / 0 AT3G24530 754 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.003G103400 [exp] 81 / 4e-17 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 77 / 1e-15 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.010G161300 [exp] 61 / 3e-10 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.005G105800 [exp] 59 / 3e-09 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.007G060400 [exp] 53 / 2e-07 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.014G051100 [exp] 53 / 2e-07 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.015G010200 [exp] 52 / 4e-07 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.010G185200 [exp] 52 / 5e-07 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023642 [exp] 805 / 0 AT3G24530 773 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10043218 [exp] 785 / 0 AT3G24530 743 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10034913 [exp] 777 / 0 AT3G24530 748 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011096 [exp] 486 / 2e-172 AT3G24530 471 / 5e-167 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011097 [exp] 276 / 2e-91 AT3G24530 252 / 2e-82 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10005293 [exp] 135 / 6e-38 AT3G24530 146 / 5e-43 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10001414 [exp] 69 / 5e-13 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10001048 [exp] 66 / 1e-11 AT4G19150 230 / 6e-76 Ankyrin repeat family protein (.1.2) Lus10041853 [exp] 58 / 8e-09 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10016561 [exp] 54 / 1e-07 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.006G158600.1 pacid=42768384 polypeptide=Potri.006G158600.1.p locus=Potri.006G158600 ID=Potri.006G158600.1.v4.1 annot-version=v4.1 ATGAACACAGAAACAATGCAGCGGAATCGTCAGGGTCAAGGGTCGAGAATTTCCAAGCCTGCCACCATTCATAGCTGTGCTCAATCGGGAGATCTTCTTG GGTTCCAAAGGTTACTCAGTGGAAACCCTTATCTCCTCAATGAAAGAAACCCTGTTATGGCGCAGACTCCACTTCATGTTTCTGCTGGTTACAACAGGGC TGAGATAATTAAATTTCTTCTTGATTGGCAAGGAGCTGAGAAGGTTGAACTGGAGCCTAGGAATATGTATGGAGAAACTCCTTTACACATGGCAGCAAAG AATGGTTGCAGCGAAGCTGCACGGTTGCTTCTTGCTCATGGTGCTATTATTGAAGCCAAAGCGAATAATGGAATGACACCGTTACACCTTGCAGTTTGGT ACTCAATCAGAGTGGAAGATCACTCAACTGTTAAGACATTGCTGGAGTATAATGCTGACTGCAGTGCAGAGGACAATGAAGGCATGACTCCTTTGAATCA TCTCTCACCAGGTCCAAGGAGTGAGGAGTTGTGTAAACTATTGCAGTGGCATCTTGAAGAGCAGAGAAAGAGAAAAGCACTTGAAGCATGCTCTAAAACA AAAGCTAAGATGGATGAACTTGAAGATGCTTTATCAAATGTTGTGGGGTTGCATGACCTCAAGATACAACTGAGAAAATGGGCAAAGGGTATGCTTTTGG ATGAGAGGCGCAGGGCCCTTGGTATGAAAGTTGGTCTGAGAAGACCGCCTCATATGGCTTTCTTGGGAAGCCCTGGAACAGGTAAGACCATGGTAGCTCG AATACTTGGAAGATTACTGCATATGGTAGGAGTTCTACCTACTGACAAGGTAACAGAAGTACAACGTACAGATTTGGTTGGTGAATTTGTTGGTCACACT GGACCCAAGACTAGAAGAAAGATTGCAGAAGCAGAGGGAGGAATTCTTTTTGTGGATGAAGCATATCGGCTTATACCATCGCAGAAAGAGGATGAGAAGG ACTATGGGATTGAAGCCTTAGAAGAAATTATGTCTGTTATGGACAGTGGAAAAGTCGTAGTCATATTTGCTGGCTATAGTGAACCTATGAAGCGTGTGAT ATCTTCAAATGAGGGTTTCTGTAGAAGGGTTACCAAGTTTTTCCATTTTAATGACTTCTCTTCTGAAGATTTAGCAAATATTTGCCACATCAAGATGAAT AATCAGGATGAAGGTAGTTCGCTGTATGGTTTTAAATTACATTCTTCATGCAGTGGAGATGCCATTGCCGCCCTGATTGAGAGAGAAACAACAGAAAAGC AGCGTAGGGAAATGAATGGAGGTTTAGTAAATGTCATGTTAGCTAATGCTAGAGAGATTTTGGATCTCAGGCTTGATTTCAACTGTATCGATACCGATGA ACTGCAGACCATCACCTTAGAGGATTTGGAAGCTGGCTGTCAACTGTTATAG
AA sequence Show only first row Show all	>Potri.006G158600.1 pacid=42768384 polypeptide=Potri.006G158600.1.p locus=Potri.006G158600 ID=Potri.006G158600.1.v4.1 annot-version=v4.1 MNTETMQRNRQGQGSRISKPATIHSCAQSGDLLGFQRLLSGNPYLLNERNPVMAQTPLHVSAGYNRAEIIKFLLDWQGAEKVELEPRNMYGETPLHMAAK NGCSEAARLLLAHGAIIEAKANNGMTPLHLAVWYSIRVEDHSTVKTLLEYNADCSAEDNEGMTPLNHLSPGPRSEELCKLLQWHLEEQRKRKALEACSKT KAKMDELEDALSNVVGLHDLKIQLRKWAKGMLLDERRRALGMKVGLRRPPHMAFLGSPGTGKTMVARILGRLLHMVGVLPTDKVTEVQRTDLVGEFVGHT GPKTRRKIAEAEGGILFVDEAYRLIPSQKEDEKDYGIEALEEIMSVMDSGKVVVIFAGYSEPMKRVISSNEGFCRRVTKFFHFNDFSSEDLANICHIKMN NQDEGSSLYGFKLHSSCSGDAIAALIERETTEKQRREMNGGLVNVMLANAREILDLRLDFNCIDTDELQTITLEDLEAGCQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24530			AAA-type ATPase family protein...		Potri.006G158600 [exp]	0	1
AT1G48850		EMB1144	embryo defective 1144, chorism...		Potri.008G040700 [exp]	3.46	0.6995
AT1G76140			Prolyl oligopeptidase family p...		Potri.005G247300 [exp]	4.24	0.7392
AT5G18400			Cytokine-induced anti-apoptosi...		Potri.002G062200 [exp]	8.48	0.7451
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.005G045100 [exp]	11.48	0.6819	NHX2.1
AT3G59090			unknown protein		Potri.002G058500 [exp]	14.49	0.6496
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.006G158676 [exp]	19.23	0.6368
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G141500 [exp]	28.98	0.6370
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Potri.018G050800 [exp]	35.07	0.6051	Pt-MEK1.2
AT5G60580			RING/U-box superfamily protein...		Potri.016G022900 [exp]	37.14	0.6588
AT5G56350			Pyruvate kinase family protein...		Potri.003G223100 [exp]	40.91	0.6188

Compare expression of checked genes

Potri.006G158600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.