Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19600 789 / 0 SULTR3;5 sulfate transporter 3;5 (.1) AT3G51895 681 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT3G15990 608 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT4G02700 590 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G23090 571 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT4G08620 566 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G22150 520 / 5e-178 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 507 / 7e-173 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G10180 478 / 2e-161 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 449 / 7e-150 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G156038 [exp] 1239 / 0 AT5G19600 789 / 0.0 sulfate transporter 3;5 (.1) Potri.010G082700 [exp] 679 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 669 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 668 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 660 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.001G179400 [exp] 602 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.003G056200 [exp] 590 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.010G111700 [exp] 581 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 558 / 0 AT1G23090 998 / 0.0 sulfate transporter 91 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006612 [exp] 662 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 647 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10025766 [exp] 578 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10035897 [exp] 576 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10034603 [exp] 566 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10029616 [exp] 560 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10025767 [exp] 554 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10041111 [exp] 550 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10019389 [exp] 543 / 0 AT3G15990 829 / 0.0 sulfate transporter 3;4 (.1) Lus10036437 [exp] 538 / 0 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00916 [poplar] [flax] Sulfate_transp Sulfate permease family CL0502 [poplar] [flax] STAS PF01740 [poplar] [flax] STAS STAS domain
Representative CDS sequence Show only first row Show all	>Potri.006G158900.3 pacid=42766957 polypeptide=Potri.006G158900.3.p locus=Potri.006G158900 ID=Potri.006G158900.3.v4.1 annot-version=v4.1 ATGCCCACACGCAATTCCAGCATGAATCCTACCCAGGTGAATTTCAACTCCCCGAGAAAGTTTAGGACAACATTGAAATCTAAATGCAAAGAGACCTTCT TCCCTGACGACCCATTTAGACAATTCAAGAATGAGAAGCCTCTCGGCAAGGCCAAGAAAACCCTTCAATATTTCGTTCCAATCTTTGAATGGCTGCCTCA ATACAATCTTAAGATGTTTAGATTCGACCTTCTTGCTGGTATCACCATTACCAGCCTTGCCATTCCTCAAGGAATCAGCTATGCCAAACTCGCTGAAATT CCTCCAATCATTGGCCTATACTCGAGCTTTGTGCCTGCTTTAGTTTATGCAATTCTCGGGAGTTCGAAACATGTGGCGGTGGGGACAGTAGCTGCGTGCT CATTGCTCATAGCAGATACAATTGGATCCAAAGTATCATCCAAAGATGACCCAACATTGTACCTCCACTTAGTTTTCACGGCCGCTTTCATCACTGGAGT TTTTCAGGCTGCTCTAGGATTTCTAAGACTGGGGATTCTGGTGGATTTCTTGTCACATTCCACAATCACTGGTTTCATGGGAGGCACAGCGATTATTATC TGCCTACAGCAATTGAAGGGCTTGCTTGGAGTGAGCCATTTCACCACAAAAACAGATGTGGTTTCTGTTTTGCATGCAGTTTTCAAGAATAGGAATGAGT GGAAATGGGAAACCGCGGTTGTCGGCATGGCCTTCCTTGTTTTCCTGCTGTTCACCCGCTATCTGAGGCAAAGAAAACCCAAGCTATTTTGGGTCTCAGC TATGGCTCCGATGGTGGTCGTTGTACTCGGCTGCTTGTTAGCCTACTTTACTCGTGACAGTAAATACAGCATCCAAACTGTTGGGAACCTGCATAAAGGG TTAAATCCGATAAGCATCGAATACTTGAATTTTGACGCTGAGTATCTGCCCTACACTTTGAAAGCTGGAATCATTACTGGCATAATTGCTTTGGCTGAAG GGATTGCAATTGGAAGAAGCTTTGCCATAATGAATAATGAACAAGTTGATGGAAACAAGGAGATGATAGCTTTTGGTTTCATGAACATTGTTGGGTCTTG CTTTTCATGCTACTTGACCACTGGACCATTCTCAAAAACTGCAGTGAATTACAACTCTGGGTGTAAGACAGCAGCGTCGAACTTAGTAATGGCTATTGGC ATGATGCTCACTCTCCTATTCTTGGCTCCTCTCTTTAGCTATACCCCTCTCGTTGCTCTATCTGCCATTATCATGTCTGCGATGTTAGGCCTCATCAAAT ATGAGGAGGCTTATCACTTGTTCAAGGTTGACAAGTTTGATTTCTGCATTTGCTTAGCTGCTTTTTTTGGTGTTGCGTTCATAACCATGGATATGGGCCT CATGATATCAGTTGCGCTTGCTTTGTTGAGGGCACTTCTATATGTGGCCAGACCTGCTGCTTGTAAGCTTGGAAAATTGCCAGACTCAACCTTGTACCGC GACACCGAACAGTATGCTGAAGCCTCAGGTCCCCCTGGAATTCTTGCTATACAACTTGGTTCTCCTATTTATTATGCAAATGGCAACTATATAAGAGAGA GGATTCTCCGGTGGATTCGAAATGACGAGGGTAATGGGAAAGCTGTGAAGCATGTTTTGCTAGATTTGACGGGAGTTACATCCATTGACACGACAGGCAT CGAAACTTTAGCTGAAGTGCTCAGAATCTTAGAAGTCAAACACATCAAGATGAAAATTGTAAACCCCAGGCTAGATGTTTTGGAGAAAATGATGAAATCA AAATTCGTAGATAAGATCGGGAAGGAATCCATATTTTTGTGCATGGAAGATGCAGTTGAAGCAAGTTATGACTTTTCAGCCACTACAGAAAAGCAAGGGT TCGAAGAACAACGTTCGGGCGTTGCTTAG
AA sequence Show only first row Show all	>Potri.006G158900.3 pacid=42766957 polypeptide=Potri.006G158900.3.p locus=Potri.006G158900 ID=Potri.006G158900.3.v4.1 annot-version=v4.1 MPTRNSSMNPTQVNFNSPRKFRTTLKSKCKETFFPDDPFRQFKNEKPLGKAKKTLQYFVPIFEWLPQYNLKMFRFDLLAGITITSLAIPQGISYAKLAEI PPIIGLYSSFVPALVYAILGSSKHVAVGTVAACSLLIADTIGSKVSSKDDPTLYLHLVFTAAFITGVFQAALGFLRLGILVDFLSHSTITGFMGGTAIII CLQQLKGLLGVSHFTTKTDVVSVLHAVFKNRNEWKWETAVVGMAFLVFLLFTRYLRQRKPKLFWVSAMAPMVVVVLGCLLAYFTRDSKYSIQTVGNLHKG LNPISIEYLNFDAEYLPYTLKAGIITGIIALAEGIAIGRSFAIMNNEQVDGNKEMIAFGFMNIVGSCFSCYLTTGPFSKTAVNYNSGCKTAASNLVMAIG MMLTLLFLAPLFSYTPLVALSAIIMSAMLGLIKYEEAYHLFKVDKFDFCICLAAFFGVAFITMDMGLMISVALALLRALLYVARPAACKLGKLPDSTLYR DTEQYAEASGPPGILAIQLGSPIYYANGNYIRERILRWIRNDEGNGKAVKHVLLDLTGVTSIDTTGIETLAEVLRILEVKHIKMKIVNPRLDVLEKMMKS KFVDKIGKESIFLCMEDAVEASYDFSATTEKQGFEEQRSGVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G158900 [exp]	0	1
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G156038 [exp]	1.00	0.9993
					Potri.002G227701 [exp]	4.47	0.9842
AT3G17790		ATACP5, ATPAP17...	purple acid phosphatase 17 (.1...		Potri.010G101900 [exp]	5.74	0.9676
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.002G028400 [exp]	8.36	0.9729	Pt-APETALA3.1
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Potri.010G050100 [exp]	12.72	0.9483	CYP86.1
AT1G78940			Protein kinase protein with ad...		Potri.014G001700 [exp]	13.67	0.9664
AT2G36380		ABCG34, PDR6, A...	ATP-binding cassette G34, plei...		Potri.009G147100 [exp]	13.96	0.9666
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Potri.015G022300 [exp]	15.39	0.9404
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Potri.005G167300 [exp]	15.87	0.9636
AT1G78850			D-mannose binding lectin prote...		Potri.011G110000 [exp]	18.00	0.9674

Compare expression of checked genes

Potri.006G158900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.