Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57480 777 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 756 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30250 638 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 360 / 2e-119 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 359 / 6e-119 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 351 / 3e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 351 / 2e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 341 / 3e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 339 / 1e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 337 / 2e-110 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G093600 [exp] 931 / 0 AT5G57480 743 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 379 / 3e-126 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 372 / 9e-124 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G012500 [exp] 360 / 2e-119 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 357 / 2e-118 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 357 / 2e-118 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 351 / 1e-115 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 350 / 2e-115 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 350 / 4e-115 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025479 [exp] 473 / 2e-165 AT5G57480 487 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006968 [exp] 405 / 2e-139 AT5G57480 399 / 3e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 372 / 8e-124 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 359 / 7e-119 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 353 / 4e-116 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 350 / 5e-115 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014498 [exp] 339 / 6e-111 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 335 / 1e-109 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015802 [exp] 333 / 4e-109 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 329 / 2e-107 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.006G169000.1 pacid=42768625 polypeptide=Potri.006G169000.1.p locus=Potri.006G169000 ID=Potri.006G169000.1.v4.1 annot-version=v4.1 ATGAAAGAATATTGGGGCTCTTTGGCCTCAATACTTGGTGTGTTGGCCTTTTGTCAAAGTCTCCTTCATGTATTATTCCCACCAGAGCTCCGGTTTGCAA CTCTGAAACTCTTCAACCGGGTCTTTAACATGTTCACTTCTTATTGCTACTTTGATATAACAGAAATTGATGGAGTCAACACCAACGAGCTCTACAACGC AGTCCAACTCTATCTAAGCTCCTGTGTCACCATCTCTGGCAGCCGTTTGAGCCTCACTCGTGCTCTGAATTCAAGTGCCATAACTTTTGGCCTAACAAAC AATGACACTATCTTTGACACCTTCAATGGTGTTACTGTCCTTTGGGAACATATTGTGACTCAAAGACAAGCACAGACCTTTTCCTGGCGTCCATTGCCTG ACGAGAAGAGAGGTTTCACTCTACGTATCAAGAAAAAGGACAAGTCTTTGATTCTTGATTCTTATCTTGATTACATTATGGAGAAAGCCAATGATATGAG GAGGAAAAACGAGGACAGGCTTTTGTACACTAATTCAAGAGGTGGGTCTTTGGATTCAAGAGGGCATCCTTGGGAGTCAGTGCCATTTAAGCACCCAAGT ACTTTTGAGACTCTGGCTATGGACCCTGTCAAGAAAGCTGAGATCATTGAAGATTTGAAAGATTTTGCAAATGGTCAATCTTTTTATCAAAAGACAGGCA GAGCTTGGAAGAGAGGTTATTTGCTTTATGGACCTCCTGGTACTGGTAAATCTAGCATGATTGCTGCCATGGCTAATTATCTTGGTTATGATATTTACGA TCTTGAATTGACTGAGGTACACCATAACTCTGAACTTAGAAAACTTTTGATGAAAACAAGCTCAAAATCTATCATTGTTATTGAGGACATTGATTGTTCT ATTGATTTGAGTAATAGGAAGAAGGGTAGTCCTAATAATAGTAGTTCTATTGGGAGGAGTTACTGTGACCCAGAAATGCGATCTGGGCCTGGTGTTAGCA CTGGTGATGAAGGAGGGAATTCAATAACTTTATCTGGGTTATTGAATTTTACTGATGGGTTGTGGTCATGTTGTGGAAGCGAGCGGATTTTCGTGTTCAC AACAAACCACATTGACAAACTTGATCCTGCATTGTTAAGGAGTGGTAGAATGGACATGCATGTTTTCATGAGCTACTGTTCATTTCCTGCATTGAGGATC TTGTTGAAGAATTACTTGGGCAATGCAGAAAGTGATTTGGATGAGGGGGTTTTGAAGGAATTGGAAGAGGTTATTGACAAGGCAGAGATGACTCCTGCTG ATATAAGTGAGTTATTGATCAAGAACAGGAGAAATAAGGACAGGGCAGTGATTGAATTGTTGGAGGCATTGAAGAATAAGGCAGAGATGAAATTGAAGAG TGGAGAATGTGTTAGAGAGAAGAATTTGAATGATGTGGGAGAGGAAGAGGAAGAGGAAGAGCAAGAGAAGAGAGCTTTGGAGAGTCCTAAAGAAGGTTGT GACTATGAGGACAGCATCAAGAAAGAAGAGGAGGATGAAGAGAAGAAGATTAAATGA
AA sequence Show only first row Show all	>Potri.006G169000.1 pacid=42768625 polypeptide=Potri.006G169000.1.p locus=Potri.006G169000 ID=Potri.006G169000.1.v4.1 annot-version=v4.1 MKEYWGSLASILGVLAFCQSLLHVLFPPELRFATLKLFNRVFNMFTSYCYFDITEIDGVNTNELYNAVQLYLSSCVTISGSRLSLTRALNSSAITFGLTN NDTIFDTFNGVTVLWEHIVTQRQAQTFSWRPLPDEKRGFTLRIKKKDKSLILDSYLDYIMEKANDMRRKNEDRLLYTNSRGGSLDSRGHPWESVPFKHPS TFETLAMDPVKKAEIIEDLKDFANGQSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHHNSELRKLLMKTSSKSIIVIEDIDCS IDLSNRKKGSPNNSSSIGRSYCDPEMRSGPGVSTGDEGGNSITLSGLLNFTDGLWSCCGSERIFVFTTNHIDKLDPALLRSGRMDMHVFMSYCSFPALRI LLKNYLGNAESDLDEGVLKELEEVIDKAEMTPADISELLIKNRRNKDRAVIELLEALKNKAEMKLKSGECVREKNLNDVGEEEEEEEQEKRALESPKEGC DYEDSIKKEEEDEEKKIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57480			P-loop containing nucleoside t...		Potri.006G169000 [exp]	0	1
AT4G39110			Malectin/receptor-like protein...		Potri.004G158700 [exp]	20.97	0.8851
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.018G096063 [exp]	78.90	0.8715
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060252 [exp]	144.23	0.8605
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.007G130700 [exp]	181.65	0.8522
AT5G65360			Histone superfamily protein (....		Potri.003G208800 [exp]	183.80	0.8444
AT1G72890			Disease resistance protein (TI...		Potri.006G282400 [exp]	195.05	0.8406
					Potri.008G163401 [exp]	221.48	0.8292
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	259.52	0.8169
					Potri.001G422301 [exp]	281.30	0.8205
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Potri.012G016800 [exp]	293.97	0.8123

Compare expression of checked genes

Potri.006G169000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.