Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16060 277 / 2e-91 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT1G79700 257 / 3e-84 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT3G54320 229 / 1e-71 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT5G57390 204 / 1e-60 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 201 / 7e-60 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 197 / 9e-60 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G17430 198 / 2e-58 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 197 / 3e-58 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G65510 191 / 1e-56 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT5G10510 187 / 2e-54 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102200 [exp] 480 / 2e-171 AT1G16060 289 / 5e-96 ARIA-interacting double AP2 domain protein (.1.2) Potri.003G185300 [exp] 411 / 4e-144 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.001G041500 [exp] 333 / 3e-113 AT1G16060 279 / 1e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.017G078600 [exp] 228 / 9e-72 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.008G011900 [exp] 223 / 3e-70 AT3G54320 359 / 3e-122 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G247200 [exp] 224 / 4e-70 AT3G54320 337 / 8e-113 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G092800 [exp] 217 / 3e-67 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.018G091600 [exp] 204 / 1e-60 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.006G167700 [exp] 203 / 1e-60 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001553 [exp] 381 / 9e-132 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10005513 [exp] 327 / 1e-110 AT1G79700 227 / 5e-72 Integrase-type DNA-binding superfamily protein (.1.2) Lus10024101 [exp] 322 / 2e-108 AT1G16060 308 / 1e-103 ARIA-interacting double AP2 domain protein (.1.2) Lus10041618 [exp] 299 / 9e-100 AT1G79700 310 / 1e-104 Integrase-type DNA-binding superfamily protein (.1.2) Lus10036719 [exp] 221 / 2e-68 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 220 / 7e-68 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 212 / 1e-66 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030792 [exp] 213 / 3e-65 AT3G54320 280 / 6e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10031831 [exp] 207 / 6e-63 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10030671 [exp] 206 / 9e-63 AT3G54320 280 / 5e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.006G179900.2 pacid=42767475 polypeptide=Potri.006G179900.2.p locus=Potri.006G179900 ID=Potri.006G179900.2.v4.1 annot-version=v4.1 ATGGCGAAATTATCACAGCAGAACACAAAAAACACAGCAATTAACAGAAATAATACGACTAATGGTGTTACCAAGGTGAAACGAACAAGGAGAAGTGTGC CAAGAGACTCTCCTCCTCAACGTAGCTCCATTTATCGTGGTGTTACTAGGCATCGATGGACCGGCCGATATGAAGCTCATTTGTGGGATAAGAATTGCTG GAATGAATCACAAAACAAGAAAGGACGACAAGTCTACCTTGGTGCCTATGATGACGAAGAAGTTGCAGCACATGCCTATGACTTAGCGGCATTGAAATAC TGGGGTCCTGAGACAATCCTTAATTTTCCGTTATCGACATACCAAAACCAGCTGAAAGAAATGGAGGGTAGGTCTAGAGAAGAGTACATCGGATCATTGA GAAGGAAAAGCAGTCGTGGGGTTCCAAAATATCGAGGAGTTTCTAGGCATCATCACAATGGAGGTTGGGAAGCTCGGATTGGCAGAGTGTTTGGCAACAA GTACTTGTATCCTGGGACATATGCTACTCAAGAAGAAGCTGCGGCCGCATATGGTATAGAGCACCGGGGCCTGAACGCTGATCTTAGCCGGTACATCAAG TGGCTGAAACCCAATCAAAATAACAGTAACGGCAGCAATGATCTGAATCTTCCTAACCCTATGATCATAGGCACTGATAACTCAACTCATCGTAACCCTA ATCAAGAACTCGGACCACCATTCCTTCACAACGAACAAACCTACCAACCTAGTGAAACTACATTAATTCCACTAAGGCCAGCTGCTGCGAATCCCACATC AGCCCTAGGGCTCTTACTTCAATCATCCAAGTTCAAGGAAATGATGGAAATGACAGCAGTGACAGACTGCCCACCAACCTCATCGTCAGACTTAGAACTG ACACCGTGTAGCTTCCCTGAAGACGTACAAACATATTTTGAGTGCCAATATTCAAGTAGCTATGGAGATCAAGGAGATGATATGATTTTCGGTGACTACA ACTCGTTTATGCCACCCATGTTTCACTCCGATTTCTAA
AA sequence Show only first row Show all	>Potri.006G179900.2 pacid=42767475 polypeptide=Potri.006G179900.2.p locus=Potri.006G179900 ID=Potri.006G179900.2.v4.1 annot-version=v4.1 MAKLSQQNTKNTAINRNNTTNGVTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEVAAHAYDLAALKY WGPETILNFPLSTYQNQLKEMEGRSREEYIGSLRRKSSRGVPKYRGVSRHHHNGGWEARIGRVFGNKYLYPGTYATQEEAAAAYGIEHRGLNADLSRYIK WLKPNQNNSNGSNDLNLPNPMIIGTDNSTHRNPNQELGPPFLHNEQTYQPSETTLIPLRPAAANPTSALGLLLQSSKFKEMMEMTAVTDCPPTSSSDLEL TPCSFPEDVQTYFECQYSSSYGDQGDDMIFGDYNSFMPPMFHSDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.006G179900 [exp]	0	1
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191500 [exp]	1.00	0.9992
AT1G09910			Rhamnogalacturonate lyase fami...		Potri.011G006200 [exp]	4.58	0.9982
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.005G088600 [exp]	5.29	0.9981
					Potri.008G193650 [exp]	5.65	0.9956
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G143600 [exp]	6.32	0.9970
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075300 [exp]	7.34	0.9978
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196800 [exp]	7.93	0.9978
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.015G091200 [exp]	9.38	0.9969
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118500 [exp]	9.48	0.9975
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075100 [exp]	10.39	0.9967

Compare expression of checked genes

Potri.006G179900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.