Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25180 386 / 4e-126 GARP ARR12 response regulator 12 (.1) AT5G58080 354 / 3e-113 GARP ARR18 response regulator 18 (.1) AT4G31920 338 / 3e-108 GARP ARR10 response regulator 10 (.1) AT4G16110 314 / 2e-97 GARP ARR2 response regulator 2 (.1) AT3G16857 311 / 2e-96 GARP ARR1 response regulator 1 (.1.2) AT2G01760 256 / 6e-79 GARP ARR14 response regulator 14 (.1) AT1G67710 256 / 3e-77 GARP ARR11 response regulator 11 (.1) AT5G49240 175 / 2e-49 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 132 / 1e-33 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT2G27070 119 / 6e-28 GARP ARR13 response regulator 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111300 [exp] 1118 / 0 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G262100 [exp] 514 / 1e-174 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 464 / 4e-155 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.010G001000 [exp] 328 / 9e-103 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 327 / 4e-102 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 302 / 8e-93 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 298 / 2e-91 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.010G053100 [exp] 267 / 6e-81 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 258 / 3e-77 AT1G67710 383 / 5e-127 response regulator 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005340 [exp] 395 / 2e-128 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 394 / 2e-128 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10037719 [exp] 328 / 2e-102 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10016846 [exp] 327 / 7e-102 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10019058 [exp] 305 / 2e-95 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 298 / 2e-92 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10006446 [exp] 275 / 5e-85 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10011389 [exp] 273 / 6e-85 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10025044 [exp] 183 / 1e-50 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 140 / 9e-35 AT4G16110 169 / 4e-45 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G188000.1 pacid=42769177 polypeptide=Potri.006G188000.1.p locus=Potri.006G188000 ID=Potri.006G188000.1.v4.1 annot-version=v4.1 ATGATGGCTGTAGACGACCAAAGGGGTGGTAATTCAGTTAATGAAAAAAAGTTTCCTGTTGGAATGCGTATTCTAGCTGTTGATGATGACCCAATTTGCC TCAAAGTTTTGGAGAATTTGCTTCGTAAATGCCAGTATGAGGTTACAACTACCAATCAAGCAGTCACTGCGCTGGAAATGTTGAGAGAAAACAGAAACAA GTATGACTTGGTTATCAGTGACGTTAACATGCCAGACATGGATGGCTTTAAGCTCCTTGAACTCGTGGGGCTCGAAATGGACCTACCTGTCATAATGTTA TCATCTCATGGTGATAAAGAGTTTGTATACAAGGGCGTTACACATGGTGCTGTTGACTATTTGCTAAAACCTGTTCGAATGGAGGAGCTCAAAAACATAT GGCAACACGTAATCAGGAGAAAGAAATGGTATCCCGAGGACCAAAACAGGTCCCCAAATCAAGACAAGGGTGATGACGGAGCTGGAGAAGGGGAACAAGG AGTGACATCAACTGGTAGTGCGGATCAAAATGGAAAACTAAATAGGAAACGTAAGGACCAAGATGATGAGGATGAAGAAGAGGGTGAAGATGGAGATGAT AATGAGGTATCTGGGAATCAGAAGAAGCCTCGAGTTGTCTGGTCTGTTGATTTGCATCAGAAGTTTGTCGCCGCTGTTAATCAAATGGGTCTTGACAAGG CTGTTCCAAAGAAAATACTTGACCTGATGAATGTTGATGGCCTTACAAGGGAAAACGTGGCAAGTCATTTGCAGAAATTTAGGCTTTACCTGAAAAGACT AAGTAGTGGAGGAAACCAGCAAGGCAACATGGTTTCTGCATTCGGTGCTAAAGACTCATCTTACTTGCAAATGAGTTCAGTTGATGGATTTGGAGATTTT CGCTCTATGCATGGACCAGGAAGGCTTTCAACCACTTCTCTTTCATCATATCCATCTGGGACTTTTCTTGGTAGATTGAACTCTCCTGGGGGTTTAACCT TGCAGGGAATAGCTTCTTCTGGGCTGCACCAGCCAGGTCTCTTACCAACAAACCAGGGTACAAATTTATTTCAAGGGATTTCATCAGCACTGGAGCCCAA GCAACTACAAATGAAGTCCATTAACCATATTGGAGAGTTTAATCAGAAAGGTGATACAGCAGGTTTTACACTTGCAAGTTGCTTCCCAGATGTCAAAGTG ACTATTGGTAGCTTGAGCAACACCATATCTGGTGCCACAAGCAGCCCTCCGATATTACAAGCGAACCCACAACAAAATCATAATAGAGGATCATTGGTGA CTCAATCTTCTCTAAGCATGCCTTCATTGAATCAGGAGTCTTTTGATGTTGGTGTCCAGGGCTCTTCAAATTTTCTGAATCATAGTAGATGTGATGATAA CTGGCAGGGTGCAGTTCAATTGTCCACTTTTCCTTCTTTGCCAATCGGTGAACCTTTCCGACATGATCAATTACCTTCCAGTACCTTGAGAGGCAATATA TCTTCCACTACCTGTCACATTGTTAATAGCCCCATCGATTTTTCCTCTACGGGTTCTCTCACAGCACCTTTAGAAGATTCCAGAGTAGACATGCAAGGAC AAACAGACTTTATTGGTAATATTTTTCAGAATACAACAAATTACATTTCAAAGAACAGATGGGAAGAAAATAGCCAAAACTATAATCCTGGTCTAAATGG TTCATTCGGTGCCATGAATTCCCTGGTTTCTGGCAATGGTTCCAGTGGTGCATTGAACCAGAGTATGGACCAAAGGAAACGGTTTGGCGCATCTATGATT GGTCAATCAAACAGTGGGACTCTATCCATGTTTCAGCATCCTGATGTTGAGAATTTTGCTTTGGATCCAAAAATGAGGTCTAACGAGGATGTTATCTTGG CACAAACAAAGTCCCAGAATGGTTTCGTTCAAAATAATTATGAGTCTTTGGATGATATAATGAATGAAATGATCAAACAGGATCAAAATGATGGTTCCTT AATGGATGGAGAATTCAGGTTTGGATCTTTCTCACCTGGATCATGCATGTGA
AA sequence Show only first row Show all	>Potri.006G188000.1 pacid=42769177 polypeptide=Potri.006G188000.1.p locus=Potri.006G188000 ID=Potri.006G188000.1.v4.1 annot-version=v4.1 MMAVDDQRGGNSVNEKKFPVGMRILAVDDDPICLKVLENLLRKCQYEVTTTNQAVTALEMLRENRNKYDLVISDVNMPDMDGFKLLELVGLEMDLPVIML SSHGDKEFVYKGVTHGAVDYLLKPVRMEELKNIWQHVIRRKKWYPEDQNRSPNQDKGDDGAGEGEQGVTSTGSADQNGKLNRKRKDQDDEDEEEGEDGDD NEVSGNQKKPRVVWSVDLHQKFVAAVNQMGLDKAVPKKILDLMNVDGLTRENVASHLQKFRLYLKRLSSGGNQQGNMVSAFGAKDSSYLQMSSVDGFGDF RSMHGPGRLSTTSLSSYPSGTFLGRLNSPGGLTLQGIASSGLHQPGLLPTNQGTNLFQGISSALEPKQLQMKSINHIGEFNQKGDTAGFTLASCFPDVKV TIGSLSNTISGATSSPPILQANPQQNHNRGSLVTQSSLSMPSLNQESFDVGVQGSSNFLNHSRCDDNWQGAVQLSTFPSLPIGEPFRHDQLPSSTLRGNI SSTTCHIVNSPIDFSSTGSLTAPLEDSRVDMQGQTDFIGNIFQNTTNYISKNRWEENSQNYNPGLNGSFGAMNSLVSGNGSSGALNQSMDQRKRFGASMI GQSNSGTLSMFQHPDVENFALDPKMRSNEDVILAQTKSQNGFVQNNYESLDDIMNEMIKQDQNDGSLMDGEFRFGSFSPGSCM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.006G188000 [exp]	0	1
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.014G120000 [exp]	33.76	0.6932
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.015G135800 [exp]	41.71	0.6632	RSP40.2
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.005G219100 [exp]	87.68	0.6432
AT2G39670			Radical SAM superfamily protei...		Potri.010G203300 [exp]	150.36	0.5967
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.018G147873 [exp]	174.76	0.6010
AT3G44990		AtXTH31, XTH31,...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G006600 [exp]	188.99	0.6024	XTR8.1
AT5G59910		HTB4	Histone superfamily protein (....		Potri.010G230701 [exp]	200.34	0.5986
AT5G59520		ZIP2	ZRT/IRT-like protein 2 (.1)		Potri.009G034600 [exp]	223.99	0.5906

Compare expression of checked genes

Potri.006G188000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.