Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13540 169 / 1e-52 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT1G22640 168 / 2e-52 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G09460 166 / 9e-52 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT5G14750 164 / 3e-51 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT4G38620 166 / 4e-51 MYB AtMYB4 myb domain protein 4 (.1) AT5G40330 164 / 5e-51 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT1G35515 162 / 1e-50 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT4G34990 162 / 8e-50 MYB ATMYB32 myb domain protein 32 (.1) AT2G16720 161 / 2e-49 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G28110 161 / 3e-49 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G049000 [exp] 309 / 1e-108 AT5G14750 167 / 1e-52 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.003G064600 [exp] 227 / 4e-76 AT5G14750 166 / 5e-52 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.001G169600 [exp] 223 / 1e-74 AT5G14750 167 / 9e-53 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.003G079100 [exp] 196 / 2e-64 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.003G144200 [exp] 175 / 1e-54 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.006G221800 [exp] 175 / 2e-54 AT4G38620 197 / 5e-62 myb domain protein 4 (.1) Potri.001G086700 [exp] 174 / 2e-54 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.017G128900 [exp] 171 / 1e-53 AT4G09460 222 / 6e-73 myb domain protein 6 (.1) Potri.004G088100 [exp] 171 / 2e-53 AT4G09460 227 / 5e-75 myb domain protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000470 [exp] 187 / 4e-59 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 186 / 1e-58 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10000411 [exp] 168 / 5e-52 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10009448 [exp] 168 / 8e-52 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10016948 [exp] 167 / 1e-51 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10033473 [exp] 166 / 1e-51 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10001548 [exp] 166 / 4e-51 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10041888 [exp] 164 / 4e-51 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10028435 [exp] 163 / 1e-50 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10039173 [exp] 163 / 4e-50 AT3G13540 244 / 3e-81 myb domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G221200.1 pacid=42767126 polypeptide=Potri.006G221200.1.p locus=Potri.006G221200 ID=Potri.006G221200.1.v4.1 annot-version=v4.1 ATGGCTCCTAGGAGCAGTAAATGCAATAAAAAGGAAGCTAACAGAGGAGCATGGACAGCTGAAGAGGACCAAAAACTTGCCCAAGTCATTGAAATTCATG GTCCGAAGAGGTGGAGATCCGTTGCAGCCAAAGCAGGTCTGAACAGATGTGGTAAGAGTTGCAGGTTGAGATGGATGAATCATCTTAGACCAAATATTAA GAGGGGTAACATATCAGACCAAGAAGAGGACTTGATAGTTAGGCTTCATAAGCTCCTTGGAAACAGATGGTCTTTGATAGCTGGAAGACTGCCTGGAAGG ACTGATAATGAGATCAAGAATTATTGGAATTCTCATTTGAGCAAAAAAATAAAGCAAAATGAGAAGCCAGTGAGAAGCTCGACATGGCAAGAACCTGATA CTGTGAAAACTAAGGTACTGGACATGGACAATGTTGCCAAGAGAAGTGAGGAGGGTACCTCTAAGACACTTGAGGACTCAAAATTTAGCTTTGGTGGGGA TGGATTCTTTGATTTCTCCAATGAGGATCCTCTGAATTTGGAATGGATGAGTGAATTCCTCGAACTCGATGAGACTTTGTATGGCTTTCCATGA
AA sequence Show only first row Show all	>Potri.006G221200.1 pacid=42767126 polypeptide=Potri.006G221200.1.p locus=Potri.006G221200 ID=Potri.006G221200.1.v4.1 annot-version=v4.1 MAPRSSKCNKKEANRGAWTAEEDQKLAQVIEIHGPKRWRSVAAKAGLNRCGKSCRLRWMNHLRPNIKRGNISDQEEDLIVRLHKLLGNRWSLIAGRLPGR TDNEIKNYWNSHLSKKIKQNEKPVRSSTWQEPDTVKTKVLDMDNVAKRSEEGTSKTLEDSKFSFGGDGFFDFSNEDPLNLEWMSEFLELDETLYGFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.006G221200 [exp]	0	1
AT2G40460			Major facilitator superfamily ...		Potri.019G055800 [exp]	1.41	0.8820
AT5G19640			Major facilitator superfamily ...		Potri.001G013400 [exp]	2.44	0.8606
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G085000 [exp]	2.44	0.8634
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Potri.002G033000 [exp]	4.00	0.8514	Pt-CYP722.2
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003000 [exp]	7.41	0.8283
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141500 [exp]	9.94	0.8006
AT5G20260			Exostosin family protein (.1)		Potri.006G064850 [exp]	10.58	0.7839
AT5G59020			Protein of unknown function (D...		Potri.001G246200 [exp]	12.80	0.7375
AT3G57200			unknown protein		Potri.006G045500 [exp]	13.41	0.8153
AT4G27290			S-locus lectin protein kinase ...		Potri.011G154400 [exp]	14.96	0.8059

Compare expression of checked genes

Potri.006G221200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.